Characterization of novel CTNNB1 mutation in Craniopharyngioma by whole-genome sequencing by Juan He, Zhen Zeng, Yuelong Wang, Jiaojiao Deng, Xin Tang, Fujun Liu, Jianhan Huang, Hongxu Chen, Ruichao Liang, Xin Zan, Zhiyong Liu, Aiping Tong, Gang Guo, Jianguo Xu, Xiaofeng Zhu, Liangxue Zhou, Yong Peng

“…Methods In this study, we conducted whole genome sequencing (WGS) on twenty-six CPs including 16 ACPs and 10 PCPs together with their matched blood samples. …”
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Using Evolutionary Analyses to Refine Whole-Genome Sequence Match Criteria by Arthur W. Pightling, Hugh Rand, James Pettengill

Subjects: “…whole-genome sequence…”
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Detection of Antibiotic Resistance Genes in Pseudomonas aeruginosa by Whole Genome Sequencing by Ahmed OB

“…Omar B Ahmed Department of Environmental and Health Research, The Custodian of the Two Holy Mosques Institute of Hajj and Umrah Research, Umm Al-Qura University, Makkah, Saudi ArabiaCorrespondence: Omar B Ahmed, Email abuaglah1@hotmail.comBackground: Multidrug-resistant Pseudomonas aeruginosa has become a hazard to public health, making medical treatment challenging and ineffective. Whole-genome sequencing for antibiotic susceptibility testing offers a powerful replacement for conventional microbiological methods.Objective: The present study evaluated the presence of antibiotic resistance genes in selected clinical strains of P. aeruginosa using whole-genome sequencing for antibiotic susceptibility testing.Results: Whole-genome sequencing of P. aeruginosa susceptible to common antibiotics showed the presence of 4 antibiotic resistance gene types, fosA, catB7, blaPAO, and blaOXA-50. …”
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Whole-genome sequencing and phylogenetic analysis of rabies viruses from Jordan. by Laith N Al-Eitan, Guanghui Wu, Megan Golding, Yue Tang, Hooman Goharriz, Denise A Marston, Anthony R Fooks, Lorraine M McElhinney

“…Five specimens were from stray dogs and two from foxes. The whole genome sequences were obtained from the positive samples. …”
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Identification of Salmonella for public health surveillance using whole genome sequencing by Philip M. Ashton, Satheesh Nair, Tansy M. Peters, Janet A. Bale, David G. Powell, Anaïs Painset, Rediat Tewolde, Ulf Schaefer, Claire Jenkins, Timothy J. Dallman, Elizabeth M. de Pinna, Kathie A. Grant, Salmonella Whole Genome Sequencing Implementation Group

Subjects: “…Whole genome sequencing…”
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Whole-Genome Sequencing for Resistance Level Prediction in Multidrug-Resistant Tuberculosis by Jinli Li, Tingting Yang, Chuangyue Hong, Zheng Yang, Likai Wu, Qian Gao, Hui Yang, Weiguo Tan

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Identification of genetic variants by whole genome sequencing in Ankamali pigs of Kerala by Michelle Elizabeth Roy, M. Manoj, P.M. Rojan, Tina Sadan, T.V. Aravindakshan, A.P. Usha, M.P. Unnikrishnan

“…The current study aims to determine the genetic variations in Ankamali pigs using whole genome sequencing. The GATK HaplotypeCaller was used to identify the variants. …”
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Clinicopathologic Features and Whole Genome Sequencing of a Primary Osteosarcoma of the Uterus by Valerie Shiwen Yang, Jing Quan Lim, Timothy Kwang Yong Tay, Sathiyamoorthy Selvarajan, Cedric Chuan-Young Ng, Mohamad Farid, Bin Tean Teh, Jason Yongsheng Chan

“…Despite initial response to doxorubicin and ifosfamide, the patient succumbed to brain metastases just 8 months from diagnosis. Whole genome sequencing was performed on tumor and blood samples to analyze genetic alterations in this highly aggressive tumor. …”
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Whole genome sequencing unveils genetic heterogeneity in optic nerve hypoplasia. by Sara Dahl, Maria Pettersson, Jesper Eisfeldt, Anna Katharina Schröder, Ronny Wickström, Kristina Teär Fahnehjelm, Britt-Marie Anderlid, Anna Lindstrand

“…We performed array comparative genomic hybridization and whole genome sequencing in 29 individuals with ONH. Rare variants were verified by Sanger sequencing and inheritance was assessed in parental samples. …”
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In vivo capsular switch in Streptococcus pneumoniae--analysis by whole genome sequencing. by Fen Z Hu, Rory Eutsey, Azad Ahmed, Nelson Frazao, Evan Powell, N Luisa Hiller, Todd Hillman, Farrel J Buchinsky, Robert Boissy, Benjamin Janto, Jennifer Kress-Bennett, Mark Longwell, Suzanne Ezzo, J Christopher Post, Mirjana Nesin, Alexander Tomasz, Garth D Ehrlich

“…Both strains belonged to the pandemic lineage PMEN1 but they differed strikingly in virulence when tested in the mouse model of IP infection: as few as 1000 CFU of SV36 killed all mice within 24 hours after inoculation while SV35-T23 was avirulent.Whole genome sequencing (WGS) of the two isolates was performed (i) to test if these two isolates belonging to the same clonal type and recovered from an identical epidemiological scenario only differed in their capsular genes? …”
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Clinical Utility of Whole Genome Sequencing for Undiagnosed Rare Genetic Disorders by Muhammad Qasim Awan

“…Clinical Utility of Whole Genome Sequencing for Undiagnosed Rare Genetic Disorders…”

Whole Genome Sequencing Contributions and Challenges in Disease Reduction Focused on Malaria by Olusegun Philip Akoniyon, Taiye Samson Adewumi, Leah Maharaj, Olukunle Olugbenle Oyegoke, Alexandra Roux, Matthew A. Adeleke, Rajendra Maharaj, Moses Okpeku

Subjects: “…whole genome sequencing…”
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Whole Genome Sequencing Reveals Biopesticidal Origin of Bacillus thuringiensis in Foods by Michael Biggel, Danai Etter, Sabrina Corti, Peter Brodmann, Roger Stephan, Monika Ehling-Schulz, Sophia Johler

“…In this study, we analyzed whole-genome sequences of 33 B. thuringiensis isolates from biopesticides, food, and human fecal samples linked to outbreaks. …”
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Real-Time Whole-Genome Sequencing for Surveillance of Listeria monocytogenes, France by Alexandra Moura, Mathieu Tourdjman, Alexandre Leclercq, Estelle Hamelin, Edith Laurent, Nathalie Fredriksen, Dieter Van Cauteren, Hélène Bracq-Dieye, Pierre Thouvenot, Guillaume Vales, Nathalie Tessaud-Rita, Mylène M. Maury, Andreea Alexandru, Alexis Criscuolo, Emmanuel Quevillon, Marie-Pierre Donguy, Vincent Enouf, Henriette de Valk, Sylvain Brisse, Marc Lecuit

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The Development of an Infrastructure to Facilitate the Use of Whole Genome Sequencing for Population Health by Nephi A. Walton, Brent Hafen, Sara Graceffo, Nykole Sutherland, Melanie Emmerson, Rachel Palmquist, Christine M. Formea, Maricel Purcell, Bret Heale, Matthew A. Brown, Christopher J. Danford, Sumathi I. Rachamadugu, Thomas N. Person, Katherine A. Shortt, G. Bryce Christensen, Jared M. Evans, Sharanya Raghunath, Christopher P. Johnson, Stacey Knight, Viet T. Le, Jeffrey L. Anderson, Margaret Van Meter, Teresa Reading, Derrick S. Haslem, Ivy C. Hansen, Betsey Batcher, Tyler Barker, Travis J. Sheffield, Bhaskara Yandava, David P. Taylor, Pallavi Ranade-Kharkar, Christopher C. Giauque, Kenneth R. Eyring, Jesse W. Breinholt, Mickey R. Miller, Payton R. Carter, Jason L. Gillman, Andrew W. Gunn, Kirk U. Knowlton, Joshua L. Bonkowsky, Kari Stefansson, Lincoln D. Nadauld, Howard L. McLeod

“…We have developed an infrastructure utilizing informatics tools and clinical processes to facilitate the use of whole genome sequencing data for population health management across the healthcare system. …”
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Whole-genome sequencing of acral melanoma reveals genomic complexity and diversity by Felicity Newell, James S. Wilmott, Peter A. Johansson, Katia Nones, Venkateswar Addala, Pamela Mukhopadhyay, Natasa Broit, Carol M. Amato, Robert Van Gulick, Stephen H. Kazakoff, Ann-Marie Patch, Lambros T. Koufariotis, Vanessa Lakis, Conrad Leonard, Scott Wood, Oliver Holmes, Qinying Xu, Karl Lewis, Theresa Medina, Rene Gonzalez, Robyn P. M. Saw, Andrew J. Spillane, Jonathan R. Stretch, Robert V. Rawson, Peter M. Ferguson, Tristan J. Dodds, John F. Thompson, Georgina V. Long, Mitchell P. Levesque, William A. Robinson, John V. Pearson, Graham J. Mann, Richard A. Scolyer, Nicola Waddell, Nicholas K. Hayward

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Whole-genome sequencing of extrachromosomal circular DNA of cerebrospinal fluid of medulloblastoma by Yi Zhu, Zhihui Liu, Yuduo Guo, Shenglun Li, Yanming Qu, Lin Dai, Yujia Chen, Weihai Ning, Hongwei Zhang, Lixin Ma, Lixin Ma

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Whole Genome Sequence of an Edible and Potential Medicinal Fungus, Cordyceps guangdongensis by Chenghua Zhang, Wangqiu Deng, Wenjuan Yan, Taihui Li

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Single whole genome sequencing analysis blazes the trail for precision medicine by Giulia C. Napoli, Cindy H. Chau, William D. Figg

“…As precision oncology evolves toward developing more targeted therapies, sequencing has moved to the forefront of treatment decision-making. Whole genome sequencing (WGS) has emerged as a technology capable of identifying candidates for rare and targeted treatments. …”
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Isolate-Based Surveillance of Listeria monocytogenes by Whole Genome Sequencing in Austria by Adriana Cabal, Adriana Cabal, Ariane Pietzka, Steliana Huhulescu, Franz Allerberger, Werner Ruppitsch, Daniela Schmid

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