Assessment of the Utility of Whole Genome Sequencing of Measles Virus in the Characterisation of Outbreaks. by Ana Raquel Penedos, Richard Myers, Besma Hadef, Farah Aladin, Kevin E Brown

“…We have developed an amplicon-based method for obtaining whole genome sequences (WGS) using NGS or Sanger methodologies from cell culture isolates or oral fluid specimens, and have sequenced over 60 samples, including 42 from the 2012 outbreak in the UK. …”
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Whole-genome sequencing and assembly with high-throughput, short-read technologies. by Andreas Sundquist, Mostafa Ronaghi, Haixu Tang, Pavel Pevzner, Serafim Batzoglou

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Benchmarking phasing software with a whole-genome sequenced cattle pedigree by Claire Oget-Ebrad, Naveen Kumar Kadri, Gabriel Costa Monteiro Moreira, Latifa Karim, Wouter Coppieters, Michel Georges, Tom Druet

“…We herein took advantage of whole-genome sequence data available for a Holstein cattle pedigree containing 264 individuals, including 98 trios, to evaluate several population-based phasing methods. …”
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Babesia gibsoni Whole-Genome Sequencing, Assembling, Annotation, and Comparative Analysis by Qin Liu, Xing-Ai Guan, Dong-Fang Li, Ya-Xin Zheng, Sen Wang, Xue-Nan Xuan, Jun-Long Zhao, Lan He

“…Selected specific proteins, including apetala 2 (AP2) factor, invasion-related proteins BgAMA-1 and BgRON2, and rhoptry function proteins BgWH_04g00700 were predicted, visualized, and modeled. Overall, whole-genome sequencing provided molecular-level support for the diagnosis, prevention, clinical treatment, and further research of B. gibsoni. …”
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Population Genomics of American Mink Using Whole Genome Sequencing Data by Karim Karimi, Duy Ngoc Do, Mehdi Sargolzaei, Younes Miar

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<it>P </it>elements and MITE relatives in the whole genome sequence of <it>Anopheles gambiae</it> by Nouaud Danielle, Quesneville Hadi, Anxolabéhère Dominique

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Identification of single nucleotide variants in the Moroccan population by whole-genome sequencing by Lucy Crooks, Johnathan Cooper-Knock, Paul R. Heath, Ahmed Bouhouche, Mostafa Elfahime, Mimoun Azzouz, Youssef Bakri, Mohammed Adnaoui, Azeddine Ibrahimi, Saaïd Amzazi, Rachid Tazi-Ahnini

Subjects: “…Whole genome sequencing…”
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Prediction of treatment outcomes for multidrug-resistant tuberculosis by whole-genome sequencing by Guiqing He, Yang Li, Xinchang Chen, Jiazhen Chen, Wenhong Zhang

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Universal primers for rift valley fever virus whole-genome sequencing by Kwan Woo Kim, Banseok Lee, Sujeong Eom, Donghoon Shin, Changwoo Park, Seil Kim, Hana Yi

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Cancer carrier screening in the general population using whole‐genome sequencing by Ya‐Sian Chang, Dy‐San Chao, Chin‐Chun Chung, Yu‐Pao Chou, Chieh‐Min Chang, Chia‐Li Lin, Hou‐Wei Chu, Hon‐Da Chen, Ting‐Yuan Liu, Yu‐Hsuan Juan, Shun‐Jen Chang, Jan‐Gowth Chang

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A Formative Study of the Implementation of Whole Genome Sequencing in Northern Ireland by Katie Kerr, Caoimhe McKenna, Shirley Heggarty, Caitlin Bailie, Julie McMullan, Ashleen Crowe, Jill Kilner, Michael Donnelly, Saralynne Boyle, Gillian Rea, Cheryl Flanagan, Shane McKee, Amy Jayne McKnight

“…Background: The UK 100,000 Genomes Project was a transformational research project which facilitated whole genome sequencing (WGS) diagnostics for rare diseases. …”
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Metagenomics and Whole Genome Sequencing in Clinical Microbiology: A Narrative Review by Preeti Thakur, Indira Verma

“…The role of Whole Genome Sequencing (WGS) in clinical microbiology is increasing and is not restricted to molecular epidemiology alone. …”
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Evaluating whole-genome sequencing quality metrics for enteric pathogen outbreaks by Darlene D. Wagner, Heather A. Carleton, Eija Trees, Lee S. Katz

“…Background Whole genome sequencing (WGS) has gained increasing importance in responses to enteric bacterial outbreaks. …”
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Whole-Genome Sequencing for the Investigation of a Hospital Outbreak of MRSA in China. by Zhenzhen Kong, Peipei Zhao, Haibing Liu, Xiang Yu, Yanyan Qin, Zhaoliang Su, Shengjun Wang, Huaxi Xu, Jianguo Chen

“…In this study, whole-genome sequencing (WGS) was used to gain insight into the epidemiology of the outbreak caused by MRSA, and traditional bacterial genotyping approaches were also applied to provide supportive evidence for WGS. …”
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Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure by Maria C. Fookes, James Hadfield, Simon Harris, Surendra Parmar, Magnus Unemo, Jørgen S. Jensen, Nicholas R. Thomson

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Real-time whole-genome sequencing surveillance for outbreak detection and intervention by Alexander Sundermann, Marissa Griffith, Vatsala Rangachar Srinivasa, Kady Waggle, Jane Marsh, Daria Van Tyne, Ashley Ayres, Lora Pless, Graham Snyder, Lee Harrison

“…Background: Detecting healthcare-associated transmission and outbreaks often relies on reactive whole-genome sequencing (WGS), which occurs after the suspected transmission has occurred. …”
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Whole genome sequence and comparative analysis of Borrelia burgdorferi MM1. by Neda Jabbari, Gustavo Glusman, Lena M Joesch-Cohen, Panga Jaipal Reddy, Robert L Moritz, Leroy Hood, Christopher G Lausted

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Whole genome sequencing of foodborne pathogens and global data sharing development by Xiaoran LI, Ruohong ZHANG, Yang YANG, Shenghui CUI, Yunchang GUO

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Whole genome sequencing data of Oryza sativa L. cv. Takanari by Hiromi Kajiya-Kanegae, Shiori Yabe, Hiroe Yoshida, Kaworu Ebana, Masanori Yamasaki, Hiroshi Nakagawa, Hiroyoshi Iwata

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A Microbial Metagenome (Leucobacter sp.) in Caenorhabditis Whole Genome Sequences by Riccardo Percudani

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