Coupled cycling of metals with nitrogen and carbon in marine sediments by Karolewski, Jennifer S.

“…Additionally, doubling times for the archaea performing AOM are long enough that the microbial community may not have been able to adapt on the timescale of the experiment. …”
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Time-series metagenomics reveals changing protistan ecology of a temperate dimictic lake by Krinos, Arianna I., Bowers, Robert M., Rohwer, Robin R., McMahon, Katherine D., Woyke, Tanja, Schulz, Frederik

“…Background Protists, single-celled eukaryotic organisms, are critical to food web ecology, contributing to primary productivity and connecting small bacteria and archaea to higher trophic levels. Lake Mendota is a large, eutrophic natural lake that is a Long-Term Ecological Research site and among the world’s best-studied freshwater systems. …”
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Snapshots of radical enzyme catalysis : the crystal structures of biotin synthase and lysine 5,6-aminomutase by Berkovitch, Frederick, 1978-

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Geomicrobiology of nitrogen in a coastal aquifer : isotopic and molecular methods to examine nitrification and denitrification in groundwater by Rogers, Daniel Richard

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Light-induced transcriptional responses associated with proteorhodopsin-enhanced growth in a marine flavobacterium by Kimura, Hiroyuki, Young, Curtis Robert, III, Martinez, Asuncion, DeLong, Edward

“…Proteorhodopsin (PR) is a photoprotein that functions as a light-driven proton pump in diverse marine Bacteria and Archaea. Recent studies have suggested that PR may enhance both growth rate and yield in some flavobacteria when grown under nutrient-limiting conditions in the light. …”
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A Minimal Nitrogen Fixation Gene Cluster from Paenibacillus sp. WLY78 Enables Expression of Active Nitrogenase in Escherichia coli by Wang, Liying, Zhang, Lihong, Liu, Zhangzhi, Zhao, Dehua, Liu, Xiaomeng, Zhang, Bo, Xie, Jianbo, Hong, Yuanyuan, Li, Pengfei, Chen, Sanfeng, Dixon, Ray, Li, Jilun

“…However, the complement of nif genes required to enable diazotrophic growth varies significantly amongst nitrogen fixing bacteria and archaea. In this study, we identified a minimal nif gene cluster consisting of nine nif genes in the genome of Paenibacillus sp. …”
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Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling by Baker, Matthew L., Hryc, Corey F., Zhang, Qinfen, Wu, Weimin, Jakana, Joanita, Haase-Pettingell, Cameron, Afonine, Pavel V., Adams, Paul D., King, Jonathan Alan, Jiang, Wen, Chiu, Wah

“…Bacteriophages, the most diverse and abundant organisms on earth, replicate and infect all bacteria and archaea, making them excellent potential alternatives to antibiotics and therapies for multidrug-resistant bacteria. …”
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Performance of dynamic anaerobic membrane bioreactor DAnMBR with phase separation in treating high strength food processing wastewater by Mahat, Siti Baizurah, Omar, Rozita, Che Man, Hasfalina, Mohamad Idris, Aida Isma, Mustapa Kamal, Siti Mazlina, Idris, Azni, Chelliapan, Shreeshivadasan, Jamali, Nur Syakina, Abdullah, Luqman Chuah

“…A significant correlation between COD fractions removed via acidogenesis and methanogenesis with different OLR was found, indicating that the increase in treatment performance is beneficial to the methanogenic archaea activity. The methane gas production yield achieved a maximum of 0.40 L methane/g CODadded at OLR 3.5 and 5.0 g COD/L day. …”

Performance of dynamic anaerobic membrane bioreactor (DAnMBR) with phase separation in treating high strength food processing wastewater by Mahat, Siti Baizurah, Omar, R., Che Man, H., Mohamad Idris, A. I., Mustapa Kamal, S. M., Idris, A., Shreeshivadasan, C., Jamali, N. S., Abdullah, L. C.

“…A significant correlation between COD fractions removed via acidogenesis and methanogenesis with different OLR was found, indicating that the increase in treatment performance is beneficial to the methanogenic archaea activity. The methane gas production yield achieved a maximum of 0.40 L methane/g CODadded at OLR 3.5 and 5.0 g COD/L day. …”

Diversity and functional traits of indigenous soil microbial flora associated with salinity and heavy metal concentrations in agricultural fields within the Indus Basin region, Pak... by Muhammad Usama Marghoob, Muhammad Usama Marghoob, Alejandro Rodriguez-Sanchez, Asma Imran, Fathia Mubeen, Lori Hoagland

“…Microbial communities were dominated by: Euryarchaeota (archaea), Actinobacteria, Proteobacteria, Planctomycetota, Firimicutes, Patescibacteria and Acidobacteria (bacteria), and Ascomycota (fungi), and all soils contained phylotypes capable of N-fixation and ACC-deaminase production. …”
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CHARACTERIZATION OF THE FECAL MICROBIOTA IN HORSES WITH CYATOSTOMOSIS IN MEXICO by Cintli Martínez-Ortiz-de-Montellano, Claudia Cecilia Márquez-Mota, Leslie Mariella Montes-Carreto, Rosa Estela Quiroz-Catañeda, Edgar Dantán-González, Hugo Oswaldo Toledo-Alvarado

“…Background: The excess of antimicrobials and anthelmintics cause important dysbiosis processes in equines, as well as resistance phenomena mainly in the communities of bacteria, archaea, protozoa, and helminths. The study of the equine microbiome is becoming more and more relevant to understand the biotic processes of the gastrointestinal tract. …”
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Metagenomic and Culture-Based Analyses of Microbial Communities from Petroleum Reservoirs with High-Salinity Formation Water, and Their Biotechnological Potential by Vitaly V. Kadnikov, Nikolai V. Ravin, Diyana S. Sokolova, Ekaterina M. Semenova, Salimat K. Bidzhieva, Alexey V. Beletsky, Alexey P. Ershov, Tamara L. Babich, Marat R. Khisametdinov, Andrey V. Mardanov, Tamara N. Nazina

“…The 75 metagenome-assembled genomes (MAGs) of prokaryotes reconstructed from water samples were assigned to 16 bacterial phyla, including <i>Desulfobacterota</i>, <i>Bacillota</i>, <i>Pseudomonadota</i>, <i>Thermotogota</i>, <i>Actinobacteriota</i>, <i>Spirochaetota</i>, and <i>Patescibacteria</i>, and to archaea of the phylum <i>Halobacteriota</i> (genus <i>Methanohalophilus</i>). …”
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The Lung Microbiome: A New Frontier for Lung and Brain Disease by Jiawen Chen, Ting Li, Chun Ye, Jiasheng Zhong, Jian-Dong Huang, Yiquan Ke, Haitao Sun

“…The lung microbiome includes bacteria, archaea, fungi, protozoa, and viruses. However, fungi and viruses have not been fully studied compared to bacteria in the lungs. …”
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Metabolically Active Prokaryotic Complex in Grassland and Forests’ Sod-Podzol under Polycyclic Aromatic Hydrocarbon Influence by Natalia A. Manucharova, Lev A. Pozdnyakov, Anastasiya P. Vlasova, Anastasiya S. Yanovich, Natalia A. Ksenofontova, Maria A. Kovalenko, Pavel Y. Stepanov, Alexander N. Gennadiev, Alla V. Golovchenko, Alexey L. Stepanov

“…The polluted samples showed a decrease in the biomass of the prokaryotic community representatives and a change in the metabolically active dominants–representatives of the Bacteria and Archaea domains compared to the control samples. The suppression of the metabolic activity of prokaryote cells under the influence of PAHs in sod-podzolic soil under meadow vegetation was more pronounced compared to soils under forest vegetation. …”
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Combining methods for non-invasive fecal DNA enables whole genome and metagenomic analyses in wildlife biology by Alida de Flamingh, Yasuko Ishida, Patrícia Pečnerová, Sahara Vilchis, Hans R. Siegismund, Rudi J. van Aarde, Ripan S. Malhi, Ripan S. Malhi, Alfred L. Roca, Alfred L. Roca

“…Metagenomic analyses identified taxa that included Loxodonta, green plants, fungi, arthropods, bacteria, viruses and archaea, showcasing the utility of this approach for addressing complementary questions based on host-associated DNA, e.g., pathogen and parasite identification. …”
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Nanomaterial-assisted CRISPR gene-engineering – A hallmark for triple-negative breast cancer therapeutics advancement by Jabeen Farheen, Narayan S. Hosmane, Ruibo Zhao, Qingwei Zhao, M. Zubair Iqbal, Xiangdong Kong

“…Recently, the adaptive immunity mechanism of archaea and bacteria, called clustered regularly interspaced short palindromic repeats (CRISPR) combined with nanotechnology, has been utilized as a potent gene manipulating tool with an extensive clinical application in cancer genomics due to its easeful usage and cost-effectiveness. …”
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Deep RNA sequencing of intensive care unit patients with COVID-19 by Alger M. Fredericks, Maximilian S. Jentzsch, William G. Cioffi, Maya Cohen, William G. Fairbrother, Shivam J. Gandhi, Elizabeth O. Harrington, Gerard J. Nau, Jonathan S. Reichner, Corey E. Ventetuolo, Mitchell M. Levy, Alfred Ayala, Sean F. Monaghan

“…All the patients had the SARS-CoV-2 RNA identified in the blood in addition to RNA from other viruses, bacteria, and archaea. The expression of many immune modulating genes, including PD-L1 and PD-L2, were significantly different in patients who died from COVID-19. …”
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Carotenoids: Dietary sources, health functions, biofortification, marketing trend and affecting factors – A review by Berhane S. Gebregziabher, Haileslassie Gebremeskel, Bulo Debesa, Dereje Ayalneh, Tefera Mitiku, Talef Wendwessen, Estefanos Habtemariam, Sefiya Nur, Tesfahun Getachew

“…Carotenoids are lipophilic pigments that occur widely in nature and are distributed in plants, fish, birds, algae, archaea, yeasts, fungi, bacteria, and invertebrate animals (such as insects, mites, aphids). …”
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From NTM (<i>Nontuberculous mycobacterium</i>) to <i>Gordonia bronchialis</i>—A Diagnostic Challenge in the COPD Patient by Monika Franczuk, Magdalena Klatt, Dorota Filipczak, Anna Zabost, Paweł Parniewski, Robert Kuthan, Lilia Jakubowska, Ewa Augustynowicz-Kopeć

“…The resulting sequence was checked against the 16S ribosomal RNA sequences database (Bacteria and Archaea). The ten best results indicated the genus Gordonia (99.04–100%) and 100% similarity of the 16S sequenced region was demonstrated for <i>Gordonia bronchialis</i>. …”
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Effects of Proline Substitutions on the Thermostable LOV Domain from <i>Chloroflexus aggregans</i> by Alina Remeeva, Vera V. Nazarenko, Ivan M. Goncharov, Anna Yudenko, Anastasia Smolentseva, Oleg Semenov, Kirill Kovalev, Cansu Gülbahar, Ulrich Schwaneberg, Mehdi D. Davari, Valentin Gordeliy, Ivan Gushchin

“…Light-oxygen-voltage (LOV) domains are ubiquitous photosensory modules found in proteins from bacteria, archaea and eukaryotes. Engineered versions of LOV domains have found widespread use in fluorescence microscopy and optogenetics, with improved versions being continuously developed. …”
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