A genome-wide collection of barcoded single-gene deletion mutants in Salmonella enterica serovar Typhimurium. by Steffen Porwollik, Weiping Chu, Prerak T Desai, Michael McClelland

“…Genetic screening of pools of mutants can reveal genetic determinants involved in complex biological interactions, processes, and systems. We previously constructed two single-gene deletion resources for Salmonella enterica serovar Typhimurium 14028s in which kanamycin (KanR) and chloramphenicol (CamR) cassettes were used to replace non-essential genes. …”
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Insulator Based Dielectrophoresis: Micro, Nano, and Molecular Scale Biological Applications by Prateek Benhal, David Quashie, Yoontae Kim, Jamel Ali

“…Soft particles, including cell organelles, viruses, proteins, and nucleic acids, have been manipulated using iDEP, enabling the exploration of subnanometer biological interactions. Recent investigations using this technique have demonstrated a wide range of applications, including biomarker screening, protein folding analysis, and molecular sensing. …”
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Expression of bacterial virulence factors and cytokines during in vitro macrophage infection by enteroinvasive Escherichia coli and Shigella flexneri: a comparative study by Silvia Y Bando, Ana CR Moreno, José AT Albuquerque, Juliana MK Amhaz, Carlos A Moreira-Filho, Marina B Martinez

“…Thus, genomic and structure-function molecular studies on the biological interactions of these invasive enterobacteria with eukaryotic cells have focused on Shigella rather than EIEC. …”
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Post-translational modification prediction via prompt-based fine-tuning of a GPT-2 model by Palistha Shrestha, Jeevan Kandel, Hilal Tayara, Kil To Chong

“…The complexity of these biological interactions necessitates efficient predictive methodologies. …”
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Nanoclay-Composite Hydrogels for Bone Tissue Engineering by Hee Sook Hwang, Chung-Sung Lee

“…Future research directions need to focus on refining fabrication techniques, enhancing understanding of biological interactions, and advancing towards clinical translation and commercialization. …”
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Biological hazards of micro- and nanoplastic with adsorbents and additives by Ah Reum Hong, Ah Reum Hong, Jin Su Kim, Jin Su Kim

“…This review emphasizes the need for further research into the complex biological interactions and risks posed by the accumulation of MP and NP in the environment, while also proposing potential directions for future studies.…”
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Monte Carlo Simulations in Nanomedicine: Advancing Cancer Imaging and Therapy by James C. L. Chow

“…This review explores the critical role of MC simulations in modeling complex biological interactions, optimizing NP designs, and enhancing the precision of therapeutic and diagnostic strategies. …”
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DNA Methylation Heterogeneity Patterns in Breast Cancer Cell Lines by Sunny Tian, Karina Bertelsmann, Linda Yu, Shuying Sun

“…This analysis has allowed us to contribute 19 potential breast cancer biomarker genes to cancer databases by locating “hub genes” – heterogeneous genes of significant biological interactions, selected from numerous cancer modules. …”
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Interactions between benthic copepods, bacteria and diatoms promote nitrogen retention in intertidal marine sediments. by Willem Stock, Kim Heylen, Koen Sabbe, Anne Willems, Marleen De Troch

“…Our results show that small-scale biological interactions between bacteria, copepods and diatoms can have an important impact on denitrification and hence sediment nitrogen fluxes.…”
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Liquid Crystal Based Label-Free Optical Sensors for Biochemical Application by Jieyuan Tang, Zhibin Li, Mengyuan Xie, Yunhan Luo, Jianhui Yu, Guojie Chen, Zhe Chen

“…In the past two decades, it has been discovered that liquid crystals can be used to achieve the optical amplification of biological interactions. By modifying recognition molecules, a variety of label-free biochemical sensors can be created. …”
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Systematic review and meta-analysis of the interaction between Plasmodium falciparum and Plasmodium vivax in humans by A.A. Haghdoost, N. Alexander

“…This is consistent with the idea that any difference in the species’temporal patterns should decrease the OR, and more so over longer periods of time.Interpretation & conclusion: Although such odds ratios between Plasmodium species may be partlydue to missed mixed infections when reading blood slides, the negative association between the ORand prevalence supports the existence of biological interactions such as suppression or cross-immunitybetween species.…”
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Intertwined arbovirus transmission activity: reassessing the transmission cycle paradigm. by Luis Adrian Diaz, Fernando Sebastián Flores, Agustín eQuaglia, Marta S Contigiani

“…The old perspective that arboviruses are maintained in close and stable transmission cycles should be modified by a new more integrative and dynamic idea, representing the real scenario where biological interactions have a much broader representation, indicating the constant adaptability of the biological entities.…”
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cLD: Rare-variant linkage disequilibrium between genomic regions identifies novel genomic interactions. by Dinghao Wang, Deshan Perera, Jingni He, Chen Cao, Pathum Kossinna, Qing Li, William Zhang, Xingyi Guo, Alexander Platt, Jingjing Wu, Qingrun Zhang

“…In this work, we introduce cumulative LD (cLD), a stable statistic that captures the rare-variant LD between genetic regions, which reflects more biological interactions between variants, in addition to lack of recombination. …”
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A Stable-Isotope Mass Spectrometry-Based Metabolic Footprinting Approach to Analyze Exudates from Phytoplankton by Mark R. Viant, Ulf Sommer, Ralf J. M. Weber, Erik Selander

“…Exuded compounds fuel the microbial food web and often encompass bioactive secondary metabolites like sex pheromones, allelochemicals, antibiotics, or feeding attractants that mediate biological interactions. Despite this importance, little is known about the bioactive compounds present in phytoplankton exudates. …”
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Structure of phytoplankton (Continuous Plankton Recorder and SeaWiFS) and impact of climate in the Northwest Atlantic Shelves by S. C. Leterme, S. C. Leterme, S. C. Leterme, R. D. Pingree

“…The intense hydrodynamic activity observed in the Northwest Atlantic Shelves Province makes this region especially intriguing from the point of view of physical-biological interactions. In the present work, remote sensed data of Sea Surface Height (SSH) anomalies, Sea-surface chlorophyll <i>a</i> concentrations (SeaWiFS), and Sea Surface Temperature (SST) are used to complement the Continuous Plankton Recorder (CPR) survey that continuously sampled a route between Norfolk (Virginia, USA; 39&deg; N, 71&deg; W) and Argentia (Newfoundland; 47&deg; N, 54&deg; W) over the period 1995&ndash;1998. …”
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Microbial interactions and community assembly at microscales by Cordero Sanchez, Otto X., Datta, Manoshi Sen

“…We argue that, in order to understand the role that biological interactions play in microbial community function, it is necessary to study microscale spatial organization with enough throughput to measure statistical associations between taxa and possible alternative community states. …”
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Random walk models in the life sciences: including births, deaths and local interactions by Plank, M, Simpson, M, Baker, R

“…Classical random walk models assume that all individuals in a population behave independently, ignoring local physical and biological interactions. This assumption simplifies the mathematical description of the population considerably, enabling continuum-limit descriptions to be derived and used in model analysis and fitting. …”

Sustainable resource use, economic development, and public regulation the multiproduct gill net fishery of Peninsular Malaysia by Alam, Mohammad Ferdous, Omar, Ishak Haji, Squires, Dale

“…Given the still rudimentary understanding of biological interactions among species, even in most temperate ecosystems, the importance of understanding the technological and economic interactions is heightened for sustainable economic growth and public regulation. …”
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Sustainable resource use, economic development, and public regulation: the multiproduct gill net fishery of Peninsular Malaysia by Alam, Mohammad Ferdous, Omar, Ishak, Squires, Dale

“…Given the still rudimentary understanding of biological interactions among species, even in most temperate ecosystems, the importance of under-standing the technological and economic interactions is heightened for sustainable economic growth and public regulation. …”
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A comprehensive but practical methodology for selecting biological indicators for long-term monitoring by Roger Puig-Gironès, Joan Real

“…The methodology combines several ecological levels (species, habitats, processes, and ecosystem disturbances), and embraces biological interactions and common functional guilds (detritivores, producers, herbivores, and carnivores). …”
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