A NOVEL DATA ANALYSIS PIPELINE FOR FIBER-BASED IN VIVO CALCIUM IMAGING by Catherine Thomas, Xuejun Du, Kai Wang, Jayant Rai, Kenichi Okamoto, Miles Li, Jian Zhao

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Inference of neuronal network spike dynamics and topology from calcium imaging data by Henry eLütcke, Felipe eGerhard, Friedemann eZenke, Wulfram eGerstner, Fritjof eHelmchen, Fritjof eHelmchen

“…Two-photon calcium imaging enables functional analysis of neuronal circuits by inferring action potential (AP) occurrence ('spike trains') from cellular fluorescence signals. …”
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Calcium imaging: A versatile tool to examine Huntington’s disease mechanisms and progression by Joshua Barry, Allison Peng, Michael S. Levine, Carlos Cepeda

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Transcuticular calcium imaging as a tool for the functional study of insect odorant receptors by Julia Mariette, Amélie Noël, Thierry Louis, Nicolas Montagné, Thomas Chertemps, Emmanuelle Jacquin-Joly, Frédéric Marion-Poll, Jean-Christophe Sandoz

Subjects: “…calcium imaging…”
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Bayesian inference of molecular kinetic parameters from astrocyte calcium imaging data by Ivan V. Maly, Wilma A. Hofmann

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Cell Calcium Imaging as a Reliable Method to Study Neuron–Glial Circuits by Ricardo Augusto de Melo Reis, Hércules Rezende Freitas, Fernando Garcia de Mello

Subjects: “…calcium imaging…”
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A High-Throughput Automated Microfluidic Platform for Calcium Imaging of Taste Sensing by Yi-Hsing Hsiao, Chia-Hsien Hsu, Chihchen Chen

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Calcium imaging in intact mouse acinar cells in acute pancreas tissue slices by Urška Marolt, Eva Paradiž Leitgeb, Viljem Pohorec, Saška Lipovšek, Viktória Venglovecz, Eleonóra Gál, Attila Ébert, István Menyhárt, Stojan Potrč, Marko Gosak, Jurij Dolenšek, Andraž Stožer

“…In this study, we extend previous work to functional multicellular calcium imaging on acinar cells in tissue slices. The viability and morphological characteristics of acinar cells within the tissue slice were assessed using the LIVE/DEAD assay, transmission electron microscopy, and immunofluorescence imaging. …”
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Cell type-specific calcium imaging of central sensitization in mouse dorsal horn by Charles Warwick, Joseph Salsovic, Junichi Hachisuka, Kelly M. Smith, Tayler D. Sheahan, Haichao Chen, James Ibinson, H. Richard Koerber, Sarah E. Ross

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Fast PCA for processing calcium-imaging data from the brain of Drosophila melanogaster by Strauch Martin, Galizia C Giovanni

“…<p>Abstract</p> <p>Background</p> <p>The calcium-imaging technique allows us to record movies of brain activity in the antennal lobe of the fruitfly <it>Drosophila melanogaster</it>, a brain compartment dedicated to information about odors. …”

Calcium Imaging and Electrophysiology of hippocampal Activity under Anesthesia and natural Sleep in Mice by Andrey Formozov, Mattia Chini, Alexander Dieter, Wei Yang, Jastyn A. Pöpplau, Ileana L. Hanganu-Opatz, J. Simon Wiegert

“…Measurement(s) brain activity measurement • pupil dilation Technology Type(s) two-photon calcium imaging • local field potential recording • videography Factor Type(s) calcium imaging data • local field potentials Sample Characteristic - Organism Mus musculus…”
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Calcium Imaging of AM Dyes Following Prolonged Incubation in Acute Neuronal Tissue. by Morven Cameron, Orsolya Kékesi, John W Morley, Jonathan Tapson, Paul P Breen, André van Schaik, Yossi Buskila

“…Calcium-imaging is a sensitive method for monitoring calcium dynamics during neuronal activity. …”
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Transfer entropy reconstruction and labeling of neuronal connections from simulated calcium imaging. by Javier G Orlandi, Olav Stetter, Jordi Soriano, Theo Geisel, Demian Battaglia

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Quantitative analysis of 1300-nm three-photon calcium imaging in the mouse brain by Tianyu Wang, Chunyan Wu, Dimitre G Ouzounov, Wenchao Gu, Fei Xia, Minsu Kim, Xusan Yang, Melissa R Warden, Chris Xu

“…1300 nm three-photon calcium imaging has emerged as a useful technique to allow calcium imaging in deep brain regions. …”
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Real-time multimodal sensory detection using widefield hippocampal calcium imaging by Dechuan Sun, Yang Yu, Forough Habibollahi, Ranjith Rajasekharan Unnithan, Chris French

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CaImAn an open source tool for scalable calcium imaging data analysis by Andrea Giovannucci, Johannes Friedrich, Pat Gunn, Jérémie Kalfon, Brandon L Brown, Sue Ann Koay, Jiannis Taxidis, Farzaneh Najafi, Jeffrey L Gauthier, Pengcheng Zhou, Baljit S Khakh, David W Tank, Dmitri B Chklovskii, Eftychios A Pnevmatikakis

Subjects: “…calcium imaging…”
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Model-free reconstruction of excitatory neuronal connectivity from calcium imaging signals. by Olav Stetter, Demian Battaglia, Jordi Soriano, Theo Geisel

“…We introduce an improved algorithmic approach based on Transfer Entropy to reconstruct structural connectivity from network activity monitored through calcium imaging. We focus in this study on the inference of excitatory synaptic links. …”
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CaPTure: Calcium PeakToolbox for analysis of in vitro calcium imaging data by Madhavi Tippani, Elizabeth A. Pattie, Brittany A. Davis, Claudia V. Nguyen, Yanhong Wang, Srinidhi Rao Sripathy, Brady J. Maher, Keri Martinowich, Andrew E. Jaffe, Stephanie Cerceo Page

Subjects: “…Calcium imaging…”
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Calcium imaging in intact mouse acinar cells in acute pancreas tissue slices. by Urška Marolt, Eva Paradiž Leitgeb, Viljem Pohorec, Saška Lipovšek, Viktória Venglovecz, Eleonóra Gál, Attila Ébert, István Menyhárt, Stojan Potrč, Marko Gosak, Jurij Dolenšek, Andraž Stožer

“…In this study, we extend previous work to functional multicellular calcium imaging on acinar cells in tissue slices. The viability and morphological characteristics of acinar cells within the tissue slice were assessed using the LIVE/DEAD assay, transmission electron microscopy, and immunofluorescence imaging. …”
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Model-based decoupling of evoked and spontaneous neural activity in calcium imaging data. by Marcus A Triplett, Zac Pujic, Biao Sun, Lilach Avitan, Geoffrey J Goodhill

“…Separating these two types of activity is particularly important for calcium imaging data given the slow temporal dynamics of calcium indicators. …”
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