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5241
Sampling Variation of RAD-Seq Data from Diploid and Tetraploid Potato (<i>Solanum tuberosum</i> L.)
Published 2021-02-01“…The optimized design of RAD-seq experiments enabled effective control of presentation of undesirable chloroplast DNA and RNA genes in the sequence data generated.…”
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5242
Extreme Enlargement of the Inverted Repeat Region in the Plastid Genomes of Diatoms from the Genus <i>Climaconeis</i>
Published 2021-07-01“…The other sequenced <i>Climaconeis</i> chloroplast genome is 1.5 times smaller compared with those of the <i>Climaconeis</i> cf. …”
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5243
Deciphering phenotyping, DNA barcoding, and RNA secondary structure predictions in eggplant wild relatives provide insights for their future breeding strategies
Published 2023-08-01“…In this study, we emphasized phenotypic and genotypic discriminations among 13 eggplant species deploying chloroplast–plastid (Kim matK) and nuclear (ITS2) short gene sequences (400–800 bp) at DNA barcode region followed by ITS2 secondary structure predictions. …”
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5244
Shedding light on AT1G29480 of Arabidopsis thaliana—An enigmatic locus restricted to Brassicacean genomes
Published 2022-10-01“…Abstract A key feature of C4 Kranz anatomy is the presence of an enlarged, photosynthetically highly active bundle sheath whose cells contain large numbers of chloroplasts. With the aim to identify novel candidate regulators of C4 bundle sheath development, we performed an activation tagging screen with Arabidopsis thaliana. …”
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5245
Genome-Wide Identification of the <i>LHC</i> Gene Family in Kiwifruit and Regulatory Role of <i>AcLhcb3.1/3.2</i> for Chlorophyll a Content
Published 2022-06-01“…Subcellular localization analysis showed that AcLhcb1.5/3.1/3.2 were localized in the chloroplast while transient overexpression of AcLhcb3.1/3.2 in tobacco leaves confirmed a significantly increased content of chlorophyll a. …”
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5246
Comparative proteomic analysis for revealing the advantage mechanisms of salt-tolerant tomato (Solanum lycoperscium)
Published 2022-02-01“…Moreover, the salt-tolerant cultivars had higher photosynthetic activity based on overexpression of proteins functioned in chloroplast, guaranteeing the sufficient nutrient for plant growth under salt stress. …”
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5247
Identification of elements that dictate the specificity of mitochondrial Hsp60 for its co-chaperonin.
Published 2012-01-01“…Type I chaperonins (cpn60/Hsp60) are essential proteins that mediate the folding of proteins in bacteria, chloroplast and mitochondria. Despite the high sequence homology among chaperonins, the mitochondrial chaperonin system has developed unique properties that distinguish it from the widely-studied bacterial system (GroEL and GroES). …”
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5248
The macroalgal culture collection in Kobe University (KU-MACC) and a comprehensive molecular phylogeny of macroalgae based on the culture strains
Published 2022-12-01“…Depending on the phylogenetic group, DNA sequences of the nuclear rDNA ITS region, chloroplast rbcL, and mitochondrial cox3 genes are determined and used for taxonomy and as genetic tags. …”
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5249
Ancient allopatry and ecological divergence act together to promote plant diversity in mountainous regions: evidence from comparative phylogeography of two genera in the Sino-Himal...
Published 2023-11-01“…Results Using ddRAD-seq, chloroplast genome sequences, and specific molecular markers, we studied the phylogenetic relationships, population structure, and historical biogeography of Beesia and Megacodon. …”
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5250
Research progress on the relationship between leaf senescence and quality, yield and stress resistance in horticultural plants
Published 2022-10-01“…Delaying leaf senescence could increase chloroplast lifespan and photosynthesis and thus improve source strength, leading to enhanced yield. …”
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5251
Isoprene Emission Influences the Proteomic Profile of Arabidopsis Plants under Well-Watered and Drought-Stress Conditions
Published 2022-03-01“…Overall, our proteomic data suggest that isoprene exerts its protective mechanism at different levels: under drought stress, isoprene affects the abundance of chloroplast proteins, confirming a strong direct or indirect antioxidant action and also modulates signaling and hormone pathways, especially those controlling ABA synthesis. …”
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5252
Subtle East–West Phylogeographic Break of <i>Asteropyrum</i> (Ranunculaceae) in Subtropical China and Adjacent Areas
Published 2021-11-01“…The results showed that there were two chloroplast clades and nuclear groups within <i>Asteropyrum</i>, displaying a subtle pattern of east–west differentiation. …”
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5253
In vivo polyploidy induction of Phalaenopsis amabilis in a bubble bioreactor system using colchicine
Published 2021-03-01“…Stomata size in tetraploids were larger with less density than diploids. Chloroplast number in guard cells of tetraploids was about two times more than that of control. …”
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5254
Taxonomic Delimitation of the Monostromatic Green Algal Genera <i>Monostroma</i> Thuret 1854 and <i>Gayralia</i> Vinogradova 1969 (Ulotrichales, Chlorophyta)
Published 2022-09-01“…All the specimens presented similar morphology in their single cell-layered thallus, with irregularly arranged cells, rounded cell corners, a parietal chloroplast, and predominantly one (>90%) pyrenoid. …”
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5255
Characterization and phylogenetic analysis of the complete plastid genome of Theobroma bicolor (Malvaceae) from Peru
Published 2024-02-01“…High-throughput sequencing of T. bicolor from Peru (KUELAP2926) resulted in the assembly of its complete plastid genome (GenBank accession number OQ557154). The chloroplast genome of T. bicolor is A + T-rich (62.97%), having 160,317 bp in size and containing 130 genes; including a pair of inverted repeat regions (IRs) of 25,462 bp separated by a large single copy region (LSC) of 89,221 bp and a small single copy region (SSC) of 20,172 bp. …”
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5256
Characterization of HSP70 family in watermelon (Citrullus lanatus): identification, structure, evolution, and potential function in response to ABA, cold and drought stress
Published 2023-05-01“…ClHSP70 proteins were predicted to be localized primarily in cytoplasm, chloroplast, and endoplasmic reticulum. Two pairs of segmental repeats and 1 pair of tandem repeats existed in ClHSP70 genes, and ClHSP70s underwent strong purification selection. …”
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5257
Fine Mapping and Identification of <i>SmAPRR2</i> Regulating Rind Color in Eggplant (<i>Solanum melongena</i> L.)
Published 2023-02-01“…Pigment content measurement and cytological observations demonstrated that chlorophyll content and chloroplast number in BL01 were higher than in B1. A candidate gene (EGP19168.1) was fine-mapped to a 20.36 Kb interval on chromosome 8, which was predicted to encode the two-component response regulator-like protein Arabidopsis pseudo-response regulator2 (<i>APRR2</i>). …”
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5258
In Silico Characterization of Calcineurin from Pathogenic Obligate Intracellular Trypanosomatids: Potential New Biological Roles
Published 2021-09-01“…For regulatory subunits, <i>Hs</i>CaNB-1 and <i>L</i>sppCaNB associate preferentially with the nucleus and cytoplasm, and <i>Tc</i>CaNB with chloroplast and cytoplasm. Calpain cleavage sites on CaNA suggest differential processing. …”
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5259
<i>Aux/IAA11</i> Is Required for UV-AB Tolerance and Auxin Sensing in <i>Arabidopsis thaliana</i>
Published 2022-11-01“…Our results suggest that <i>Aux/IAA11</i> plays a specific role in chloroplast retrograde signaling, since it is not repressed by high (excess) light stress, exclusively among its phylogenetic clade.…”
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5260
Climatic and biogeographic processes underlying the diversification of the pantropical flowering plant family Annonaceae
Published 2024-03-01“…A super-matrix phylogeny comprising 835 taxa (34% of Annonaceae species) based on eight chloroplast regions was used in this study. We show that global temperature may better explain the recent rapid diversification in Annonaceae than time and constant models. …”
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