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5341
Development of Genomic Resources in Mexican <i>Bursera</i> (Section: <i>Bullockia:</i> Burseraceae): Genome Assembly, Annotation, and Marker Discovery for Three Copal Species
Published 2022-09-01“…Moreover, we mapped the filtered reads of each <i>Bursera</i> species against the chloroplast genomes of five Burseraceae species, obtaining consensus sequences ranging from 156 to 160 kb in length. …”
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5342
Molecular phylogeny of mulberries reconstructed from ITS and two cpDNA sequences
Published 2019-12-01“…Methods We sequenced the ITS regions and the chloroplast DNA regions TrnL-TrnF and TrnT-TrnL from 33 mulberry accessions, and performed phylogenetic analyses to explore the evolution of mulberry. …”
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5343
Marine Bacterial Communities in the Xisha Islands, South China Sea
Published 2023-07-01“…Alteromonadales, Rhodospirllales, and Chloroplast were identified as the significantly different communities between the surface and bottom (Q value < 0.01). …”
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5344
Polymorphism of alien Erigeron canadensis L. (Asteraceae) along the Trans-Siberian Railway
Published 2022-09-01“…All plants have been divided into three haplotypes in accordance to the structure of chloroplast DNA sites (rpl32–trnL and trnL–trnF). The first two haplotypes are represented in the samples from European Russia, the third one includes all samples from the Urals, Western Siberia, the Far East, and all the rest of material collected in European part of Russia. …”
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5345
Phylogenomic Insights into the Phylogeography of <i>Halophila baillonii</i> Asch.
Published 2023-01-01“…To study their relationship, we used a hybrid capture approach targeting chloroplast loci on samples from Belize, Brazil, and the Pacific coast of Costa Rica. …”
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5346
Monophyly and transoceanic dispersal in the widespread floating club-rush clade, Isolepis subgenus Fluitantes (Cyperaceae)
Published 2022-03-01“…Thus, it is well suited for testing the generality of both the Cape-to-Cairo pattern of dispersal and transoceanic dispersal between southern Africa and Australasia.Material and methods &ndash; We inferred a dated population-level phylogeny based on new sequence data from the nuclear ITS and the chloroplast atpI&ndash;H gene regions. We constructed dispersal&ndash;extinction&ndash;cladogenesis models in Lagrange to infer ancestral areas and to compare the likelihoods of stepping-stone and long-distance modes of dispersal.Key results &ndash; The Fluitantes originated in the Cape about 7 million years ago (mya). …”
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5347
Improvement in growth of plants under the effect of magnetized water
Published 2022-11-01“…Also, irrigating plants with magnetized water resulted in a considerable increase in chloroplast pigments (carotenoids, chlorophyll a, and b) and photosynthetic activity. …”
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5348
Is chiropterophily an evolutionary dead end? A phylogenetic test in the pantropical genus Parkia (Leguminosae, Caesalpinioideae, mimosoid clade)
Published 2021-11-01“…Material and methods – Using BEAST, we estimated the ages of nodes in a phylogeny based on four chloroplast regions (matK, trnL, psbA-trnH, and rps16-trnQ) and the nuclear region ITS/18S/26S. …”
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5349
Integrated proteomics and metabolomics analysis of rice leaves in response to rice straw return
Published 2022-09-01“…The results showed that, compared with the S0 treatment, the SR treatment significantly decreased the dry weight of rice plants and non-structural carbohydrate contents and destroyed the chloroplast ultrastructure. In rice leaves of SR treatment, 329 DEPs were upregulated, 303 DEPs were downregulated, 44 DEMs were upregulated, and 71 DEMs were downregulated. …”
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5350
Assembly and comparative analysis of the initial complete mitochondrial genome of Primulina hunanensis (Gesneriaceae): a cave-dwelling endangered plant
Published 2024-04-01“…Abstract Background Primulina hunanensis, a troglobitic plant within the Primulina genus of Gesneriaceae family, exhibits robust resilience to arid conditions and holds great horticultural potential as an ornamental plant. The work of chloroplast genome (cpDNA) has been recently accomplished, however, the mitochondrial genome (mtDNA) that is crucial for plant evolution has not been reported. …”
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5351
Genome-wide transcriptional profiling provides clues to molecular mechanisms underlying cold tolerance in chickpea
Published 2023-04-01“…According to the GO enrichment analysis of uniquely down-regulated genes under cold stress in ILC533, photosynthetic membrane, photosystem II, chloroplast part, and photosystem processes were enriched, revealing that the photosynthesis is severely sensitive to cold stress in this sensitive genotype. …”
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5352
Phylogenetic relationships in the southern African genus Drosanthemum (Ruschioideae, Aizoaceae)
Published 2020-05-01“…Their phylogenetic relationships, however, have not yet been investigated, hampering understanding of monophyletic entities and patterns of geographic distribution. Methods Using chloroplast and nuclear DNA sequence data, we performed network- and tree-based phylogenetic analyses of 73 species of Drosanthemum with multiple accessions for widespread species. …”
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5353
Phylogeny and Flow Cytometry of the Genus <i>Kalidium</i> Moq. (Amaranthaceae s.l.) in Kazakhstan
Published 2023-07-01“…Sequencing of nrITS and two chloroplast fragments were used to build a phylogenetic tree, including sequences from the NCBI database., A phylogenetic tree of species of the genus <i>Kalidium</i> was compiled, which takes previously published data into consideration. …”
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5354
Assembly and Comparative Analysis of the Complete Mitochondrial Genome of Two Species of Calla Lilies (<i>Zantedeschia</i>, Araceae)
Published 2023-05-01“…Analyses of codon usage, sequence repeats, gene migration from chloroplast to mitochondrial, and RNA editing were conducted for both <i>Z. aethiopica</i> and <i>Z. odorata</i> mt genomes. …”
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5355
Unraveling the maternal and paternal origins of allotetraploid Vigna reflexo-pilosa
Published 2023-12-01“…By comparing the genomic profiles of V. hirtella and V. trinervia with those of V. reflexo-pilosa, we investigate the complex genomic mechanisms underlying allopolyploid evolution within the genus Vigna. Comparison of the chloroplast genome revealed that V. trinervia is closely related to V. reflexo-pilosa. …”
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5356
Expression dynamics of phytochrome genes for the shade-avoidance response in densely direct-seeding rice
Published 2023-01-01“…Furthermore, DDS causes senescence by downregulating the expression of chloroplast synthesis-related genes throughout almost the entire stage. …”
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5357
Climate change will disproportionally affect the most genetically diverse lineages of a widespread African tree species
Published 2022-04-01“…We used molecular data from 10 nuclear and two chloroplast genomes to identify phylogeographic groups within 746 individuals from 29 populations of Senegalia senegal, a savannah tree species in sub-Saharan Africa. …”
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5358
Genetic evaluation and germplasm identification analysis on ITS2, trnL-F, and psbA-trnH of alfalfa varieties germplasm resources
Published 2023-03-01“…Alfalfa cultivars trnL-F and psbA-trnH sequences have apparent differences, showing that chloroplast conservative sequences were independent evolution. …”
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5359
The analysis of lysine succinylation modification reveals the mechanism of oxybenzone damaging of pakchoi (Brassica rapa L. ssp. chinensis)
Published 2022-12-01“…Differentially succinylated proteins (DSPs) are distributed mainly in the chloroplast, cytoplasm, and mitochondria and are distributed mainly in primary metabolic pathways, such as reactive oxygen species (ROS) scavenging, stress resistance, energy generation and transfer, photosynthetic carbon fixation, glycolysis, and the tricarboxylic acid (TCA) cycle. …”
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5360
The Phosphoglycerate Kinase (PGK) Gene Family of Maize (<i>Zea mays</i> var. B73)
Published 2020-11-01“…B73 genome, predicted to encode proteins targeted to different subcellular compartments: <i>ZmPgk1</i>, <i>ZmPgk2,</i> and <i>ZmPgk4</i> (chloroplast), <i>ZmPgk3</i> (cytosol), and <i>ZmPgk5</i> (nucleus). …”
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