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5401
The genome of Acorus deciphers insights into early monocot evolution
Published 2023-06-01“…Phylogenetic analyses based on both chloroplast and nuclear genes consistently support that A. gramineus is the sister to the remaining monocots. …”
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5402
Genome-wide characterization of FK506-binding proteins, parvulins and phospho-tyrosyl phosphatase activators in wheat and their regulation by heat stress
Published 2022-12-01“…In silico prediction also revealed that TaFKBPs are localized to ER, nucleus, chloroplast and cytoplasm, while the TaPars are confined to cytoplasm and nucleus. …”
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5403
Dual Transcriptional Profiling of Carrot and ‘Candidatus Liberibacter solanacearum’ at Different Stages of Infection Suggests Complex Host-Pathogen Interaction
Published 2021-11-01“…At 4 wpi, terpenoid synthesis-related genes were up-regulated, presumably as a response to the psyllid feeding, whereas at 5 and 9 wpi, genes involved in both the terpenoid and flavonoid production were down-regulated and phenylpropanoid genes were up-regulated. Chloroplast-related gene expression was down-regulated, in concordance with the observed yellowing of the infected plant leaves. …”
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5404
Molecular Diversity and Phylogeny Reconstruction of Genus <i>Colobanthus</i> (Caryophyllaceae) Based on Mitochondrial Gene Sequences
Published 2022-06-01“…Although the framework of the angiosperm phylogeny was built on the information derived from chloroplast and nuclear genes, mitochondrial sequences also revealed their usefulness in solving the phylogenetic issues at different levels of plant systematics. …”
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5405
Characterization of FBA genes in potato (Solanum tuberosum L.) and expression patterns in response to light spectrum and abiotic stress
Published 2024-04-01“…In this study, we identified nine StFBA gene members in potato, with six StFBA genes localized in the chloroplast and three in the cytoplasm. The analysis of gene structures, protein structures, and phylogenetic relationships indicated that StFBA genes were divided into Class I and II, which exhibited significant differences in structure and function. …”
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5406
Hybrids as mirrors of the past: genomic footprints reveal spatio-temporal dynamics and extinction risk of alpine extremophytes in the mountains of Central Asia
Published 2024-04-01“…In this study, we combined genomic data (DArTseq), chloroplast markers, and morphology to examine phylogenetic relationships and the permeability of species boundaries and their evolutionary outcomes among the alpine extremophilic species of Puccinellia (Poaceae) in the Pamir Mountains, a part of the Mountains of Central Asia biodiversity hotspot. …”
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5407
Nanoplastics inhibit carbon fixation in algae: The effect of aging
Published 2024-04-01“…Exposure to environmentally relevant concentrations (0.1–10 mg/L) of nano-PS caused severe damage to chloroplast, inhibited the photosynthetic efficiency and electron transport, and suppressed the activities of carbon fixation related enzymes. …”
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5408
Phylogeography and ecological niche modeling implicate multiple microrefugia of Swertia tetraptera during quaternary glaciations
Published 2023-09-01“…A total of 301 individuals from 35 populations of S. tetraptera were analyzed based on two maternally inherited chloroplast fragments (trnL-trnF and trnS-trnG). Phylogeographic analysis was combined with species distribution modeling to detect the genetic variations in S. tetraptera. …”
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5409
Assembly and comparative analysis of the complete mitochondrial genome of Ilex metabaptista (Aquifoliaceae), a Chinese endemic species with a narrow distribution
Published 2023-08-01“…Gene migration was observed to occur between the mitogenome and chloroplast genome via the detection of homologous fragments. …”
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5410
Characterization of the <i>1-Deoxy-D-xylulose 5-Phosphate synthase</i> Genes in <i>Toona ciliata</i> Suggests Their Role in Insect Defense
Published 2023-01-01“…The subcellular localization results of <i>TcDXS1/2/5</i> showed that they were located in the chloroplast envelope membranes. Based on tissue-specific analyses, <i>TcDXS1/2/5</i> had the highest expression in mature leaves. …”
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5411
In silico analysis of potential loci for the identification of Vanda spp. in the Philippines
Published 2023-07-01“…It was then followed by psbA-trnH , matK , and trnL-trnF from the chloroplast genome with a species resolution of 60%, 40%, and 30.77%, respectively. …”
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5412
Green Biomass-Based Protein for Sustainable Feed and Food Supply: An Overview of Current and Future Prospective
Published 2023-01-01“…The development of extraction and precipitation methods (such as microwave coagulation) for chloroplast and cytoplasmic proteins, which constitute the bulk of leaf protein, will allow the production of leaf protein concentrates (LPC) and protein isolates (LPI). …”
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5413
Enriched-GWAS and Transcriptome Analysis to Refine and Characterize a Major QTL for Anaerobic Germination Tolerance in Rice
Published 2021-04-01“…Genome-wide comparative transcriptome analysis suggested differential regulation of sugar metabolism, particularly trehalose metabolism, as well as differential regulation of cell wall modification and chloroplast development to be implicated in AG tolerance mechanisms.…”
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5414
Comparative expression analysis of sucrose phosphate synthase gene family in a low and high sucrose Pakistani sugarcane cultivars
Published 2023-09-01“…The predominant expression of SPS in chloroplast clearly indicates that they are the most active in the organelle which is the hub of photosynthesis. …”
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5415
Target of Rapamycin Regulates Photosynthesis and Cell Growth in <i>Auxenochlorella pyrenoidosa</i>
Published 2022-09-01“…Most genes related to chloroplast development and photosynthesis were significantly down-regulated under ApTOR inhibition by AZD8055. …”
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5416
Limited gene flow in adjacent valleys and genetic introgression in a mountain hybrid zone between Aconitum (Ranunculaceae) species
Published 2023-12-01“…For this purpose, inter simple sequence repeat (ISSR) molecular markers and chloroplast DNA (cpDNA, region trn L(UAG)– ndh F) sequencing were used. …”
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5417
Barley Plants Overexpressing <i>Ferrochelatases</i> (<i>HvFC1</i> and <i>HvFC2</i>) Show Improved Photosynthetic Rates and Have Reduced Photo-Oxidative Damage under Drought Stress...
Published 2020-09-01“…As FC-derived free heme was proposed as a chloroplast-to-nuclear signal, heme could act as an important signal, stimulating drought responsive nuclear gene expression. …”
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5418
Comparative analyses of 32 complete plastomes of Tef (Eragrostis tef ) accessions from Ethiopia: phylogenetic relationships and mutational hotspots
Published 2020-06-01“…Therefore, developing chloroplast genome resources and high-resolution molecular markers are valuable to E. tef population and biogeographic studies. …”
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5419
Factors contributing to mitogenome size variation and a recurrent intracellular DNA transfer in Melastoma
Published 2023-07-01“…Whereas, between Md and either Mc or Ms, non-alignable sequences in Md are mainly chloroplast derived sequences (> 30%) and from putative horizontal DNA transfers (> 30%), and those in both Mc and Ms are from gain or loss of mitochondrial sequences (> 80%). …”
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5420
Transcriptome analysis of trembling aspen (Populus tremuloides) under nickel stress.
Published 2022-01-01“…Significant upregulation was observed in genes located in ribosome while downregulation of genes in chloroplast and mitochondrion were preponderant in resistant genotypes compared to susceptible. …”
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