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2061
Complete mitogenome and phylogenetic analysis of Oryzias celebensis (Teleostei: Beloniformes)
Published 2020-01-01“…Among the PCGs, ATG was used as the initiation codon, except for GTG in the COI gene. There were 6 overlapping genes with overlap lengths ranging from 1 to 10 nucleotides (nt), while 10 intergenic regions with a total of 59 nt and a maximum interval of 38 nt between tRNA-Asn and tRNA-Cys were detected during the annotation of this complete mitochondrial DNA.…”
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2062
The complete mitochondrial genome of the file ramshorn snail Planorbella pilsbryi (Mollusca: Gastropoda: Hygrophila: Planorbidae)
Published 2021-11-01“…Planorbella pilsbryi COXI features a rare TTG start codon while COXII, CYTB, ND2, ND3, and ND5 exhibit incomplete stop codons completed by the addition of 3′ A residues to the mRNA. …”
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2063
The complete mitochondrial genome of the Shiba shrimp Metapenaeus joyneri (Miers, 1880) (Decapoda: Penaeidae)
Published 2019-01-01“…All PCGs are initiated by ATN codons. Four of the 13 PCGs harbor the incomplete termination codon T. …”
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2064
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2065
Complete mitochondrial genome of Histia rhodope Cramer (Lepidoptera: Zygaenidae)
Published 2017-12-01“…All PCGs of Histia rhodope Cramer start with ATN codons except cox1 which start with CGA codon and all PCGs stop at TAA codons. …”
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2066
Elusive Trans-Acting Factors Which Operate with Type I (Poliovirus-like) IRES Elements
Published 2022-12-01“…The prototypic <i>cis</i>-acting element in the 5′ untranslated region (5′UTR) of poliovirus mRNA, which is able to direct initiation at an internal start codon without the involvement of a cap structure, has been called an IRES (Internal Ribosome Entry Site or Segment). …”
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2067
A subtle alternative splicing event gives rise to a widely expressed human RNase k isoform.
Published 2014-01-01“…RNase κ-02 mRNA is expressed in all human cell lines tested end encodes the synthesis of a 134-amino-acid protein by utilizing an alternative initiation codon. The expression of RNase κ-02 in the cytoplasm of human cells was verified by Western blot and immunofluorescence analysis using a specific polyclonal antibody developed on the basis of the amino-acid sequence difference between the two protein isoforms. …”
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2068
The complete mitochondrial genomes of the flapper skate Dipturus intermedius and the longnose skate Dipturus oxyrinchus
Published 2022-05-01“…In comparison to other Dipturus species, D. intermedius is missing a whole codon in its cytochrome oxidase subunit 2 gene. These mitogenomes will be a useful resource furthering investigation of the population genetic differences and evolutionary history of skate species.…”
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2069
The complete mitochondrial genome of North Island brown kiwi (Apteryx mantelli)
Published 2017-01-01“…All protein-coding genes started with Met, and ND2, COX2, and COX3 ended by TAA as a stop codon. The lengths of 12S ribosomal RNA and 16S ribosomal RNA are 973 bp and 1596 bp, respectively. …”
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2070
Transgenic plant-produced hydrolytic enzymes and the potential of insect gut-derived hydrolases for biofuels
Published 2016-05-01“…When CWD genes are transformed into plants, negative pleiotropic effects are possible such as unintended cell wall digestion. The use of codon optimization along with organelle and tissue specific targeting improves CWD enzyme yields. …”
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2071
Complete mitochondrial genome and phylogenetic analysis of willow ptarmigan (Lagopus lagopus) and rock ptarmigan (Lagopus muta) (Galliformes: Phasianidae: Tetraoninae)
Published 2017-12-01“…All protein-coding genes started with ATG, except for COX1, where a GTG codon was present in both willow ptarmigan and rock ptarmigan. …”
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2072
The complete mitochondrial genome analysis of the stonefly, Flavoperla sp. (Plecoptera: Perlidae)
Published 2019-07-01“…Eleven PCGs started with the typical codon (ATN), the remaining PCGs started with TTG (ND1and ND5). …”
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2073
Complete mitochondrial genome of the calanoid copepod Eurytemora affinis (Calanoida, Temoridae)
Published 2019-07-01“…Of 13 PCGs, ND1, ND5, and ATP6 genes had incomplete stop codons TA–, T—, and TA–, respectively. Furthermore, the stop codons of the remaining eleven PCGs were TAG or TAA while the start codon of 13 PCGs was ATG (Cytb, ATP8, ATP6, and CO3 genes), ATT (CO1, ND2, ND3, ND4L, ND5, and ND6 genes), and ATA (ND1, ND4, and CO2 genes), respectively. …”
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2074
Complete mitochondrial genome sequence of the broad-winged damselfly, Mnais pruinosa Selys, 1853 (Odonata: Calopterygidae)
Published 2019-07-01“…The genes ATP8 and ATP6 shared seven nucleotides, ATP6 and COIII shared one nucleotide, ND4 and ND4L shared seven nucleotides, and ND6 and Cytb shared one nucleotide. The initiation codon ATG was found in eight genes, ATC in four, and ATT in one; the termination codons TAA, TAG, incomplete TA, and single T were observed in seven, one, two, and three genes, respectively. …”
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2075
Characterization of the complete mitochondrial genome of demersal flatfish Eopsetta grigorjewi (Pleuronectiformes: Pleuronectidae) from South Korea
Published 2022-05-01“…ND2, ND3, ND4, COII, COIII, ATPase6, and CytB all have incomplete stop codon genes. The evolutionary analysis of 13 species from the same family indicated a close relationship. …”
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2076
Following Ribosome Footprints to Understand Translation at a Genome Wide Level
Published 2018-01-01“…The development of Ribosome Profiling has allowed the global analysis of this process at sub-codon resolution. In the last years the method has been applied to several models ranging from bacteria to mammalian cells yielding a surprising amount of insight on the mechanism and the regulation of translation. …”
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2077
Piecemeal Buildup of the Genetic Code, Ribosomes, and Genomes from Primordial tRNA Building Blocks
Published 2016-12-01“…Here we review phylogenomic analyses that reconstruct the early history of the synthetase enzymes and the ribosome, their interactions with RNA, and the inception of amino acid charging and codon specificities in tRNA that are responsible for the genetic code. …”
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2078
U2AF1 mutations in Chinese patients with acute myeloid leukemia and myelodysplastic syndrome.
Published 2012-01-01“…All mutations were heterozygous missense mutations affecting codon S34 or Q157. There was no significant association of U2AF1 mutation with blood parameters, FAB subtypes, karyotypes and other gene mutations in AML. …”
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2079
Characterization of the complete mitogenomes of Baillon's Crake Porzana pusilla and phylogenetic analysis
Published 2021-02-01“…All protein-coding genes started with ATN except COX1 and ND5, which start with GTG, and all protein-coding genes end with a complete triplet codon (TAA, AGG, AGA, and TAG), except COX3, which ends with an incomplete T. …”
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2080
Complete mitochondrial genome of the leaf-rolling-weevil, Apoderus jekelii Roelofs, 1874 (Coleoptera: Attelabidae)
Published 2019-01-01“…Nearly, all PCGs ended with complete stop codons, TAA or TAG, except for ND5 which ended with an incomplete T. …”
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