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2341
An in Silico Approach to Identifying TF Binding Sites: Analysis of the Regulatory Regions of BUSCO Genes from Fungal Species in the <i>Ceratocystidaceae</i> Family
Published 2023-03-01“…This study targeted the 1000 base-pair region upstream of the start codon of 20 single-copy genes from the BUSCO dataset for motif discovery. …”
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2342
Mechanisms Affecting the Biosynthesis and Incorporation Rate of Selenocysteine
Published 2021-11-01“…Due to the particularity of the codon encoding Sec, the selenoprotein synthesis needs to be completed by unique mechanisms in specific biological systems. …”
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2343
Potential of In Vitro Culture of <i>Scutellaria baicalensis</i> in the Formation of Genetic Variation Confirmed by ScoT Markers
Published 2022-11-01“…The paper presents a protocol for obtaining <i>Scutellaria baicalensis</i> regenerants by indirect organogenesis and the assessment of their genetic variability with the use of start codon-targeted markers. The most intense process of indirect shoot organogenesis was observed on Murashige and Skoog medium supplemented with kinetin and 6-Benzylaminopurine (0.5 mg × dm<sup>−3</sup> each)—7.4 shoot per explant on average. …”
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2344
Acute Hepatitis by Bartonella henselae Infection in an Adult Patient with Decompensated Liver Cirrhosis
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2345
Adaptive evidence of mitochondrial genes in Pteromalidae and Eulophidae (Hymenoptera: Chalcidoidea).
Published 2023-01-01“…We further examined the codon usage preferences (RSCU, ENC-GC3s, neutrality, and PR2 bias plot) in these mitochondrial protein-coding sequences and conducted positive selection analysis based on their Bayesian phylogenetic relationships, and identified positive selection sites in the ATP6, ATP8, COX1, COX3, and CYTB genes, emphasizing the crucial role of mitochondrial gene adaptive evolution in the adaptation of Pteromalidae and Eulophidae to alpine environments. …”
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2346
Multichromosomal mitochondrial genome of Punica granatum: comparative evolutionary analysis and gene transformation from chloroplast genomes
Published 2023-10-01“…The mitogenome analysis identified 114SSRs and 466 RNA editing sites. Analyses of codon usage, nucleotide diversity and gene migration from chloroplast to mitochondrial were also conducted. …”
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2347
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2348
Complete mitochondrial genome of Anthus richardi (Passeriformes: Motacillidae)
Published 2019-01-01“…The A, T, G, and C base composition of the mitochondrial DNA are 29.73%, 23.12%, 14.59% and 32.56%, respectively. The starting codon of protein-coding genes is typical ATG, except for the ND2 which starts with ATA. …”
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2349
The complete mitochondrial genome and phylogenetic analysis of Fusinus longicaudus (Gastropoda: Fasciolariidae)
Published 2019-01-01“…In 13 protein-coding genes, the nad4 gene starts with ATT, the other eleven genes start with ATG. For the stop codon, atp6, nad4l, nad5 and nad6 end with TAG, other 9 genes end with TAA. …”
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2350
New data on the mitochondrial genome of the winter crane fly (Diptera: Trichoceridae) with phylogenetic analysis
Published 2021-02-01“…Stop codons of 12 PCGs are invariably complete TAA and TAG, while COII ends with a single thymine stop codon. …”
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2351
Cytokine gene polymorphism and parasite susceptibility in free-living rodents: Importance of non-coding variants.
Published 2023-01-01“…Each SNP associated with parasite load was located in or next to a codon under selection, three codons displayed signatures of positive selection, and one of purifying selection. …”
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2352
MYCT1-TV, a novel MYCT1 transcript, is regulated by c-Myc and may participate in laryngeal carcinogenesis.
Published 2011-01-01“…METHODOLOGY/PRINCIPAL FINDINGS: Using RACE assay, we cloned a 1106 bp transcript named Myc target 1 transcript variant 1 (MYCT1-TV) and confirmed its transcriptional start site was located at 140 bp upstream of the ATG start codon of MYCT1-TV. Luciferase, electrophoretic mobility shift and chromatin immunoprecipitation assays confirmed c-Myc could regulate the promoter activity of MYCT1-TV by specifically binding to the E-box elements within -886 to -655 bp region. …”
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2353
The mitochondrial genome of Eurycantha calcarata Lucas, 1869 (Phasmatodea: Lonchodinae) and its phylogeny
Published 2021-11-01“…All PCGs used ATN as the start codon, and most PCGs used TAA/TAG as the stop codons excluding COX2 (T), COX3 (TA), and ND5 (TA). …”
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2354
Splicing of human chloride channel 1
Published 2016-03-01“…This increase in abnormal splicing variants containing exons 6B, 7A or the insertion of a TAG stop codon just before exon 7 leads to a decrease in expression of the normal splice pattern. …”
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2355
The complete mitochondrial genome of Onustus exutus(Gastropoda: Xenophoridae)
Published 2019-01-01“…Thirteen protein-coding genes start with ATG. For the stop codon, CYTB, ND6, ND4L, and ND4 end with TAG, other 9 genes end with TAA. …”
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2356
The Age Dependent Progression of Hajdu-Cheney Syndrome in Two Families
Published 2019-02-01“…Molecular analyses performed in two patients revealed that they are heterozygotes for a c.6255T>A (p.Cys2085*) variant in the NOTCH2 gene, resulting in a premature stop-codon. Bone mineral density (Z-score < –2) did not improved in a girl treated with calcium and vitamin D supplementation during childhood and bisphosphonate during adolescence. …”
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2357
On the Importance of Asymmetry in the Phenotypic Expression of the Genetic Code upon the Molecular Evolution of Proteins
Published 2020-06-01“…The standard genetic code (SGC) is a mapping between the 64 possible arrangements of the four RNA nucleotides (C, A, U, G) into triplets or codons, where 61 codons are assigned to a specific amino acid and the other three are stop codons for terminating protein synthesis. …”
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2358
Structural Features and Phylogenetic Implications of Four New Mitogenomes of Caliscelidae (Hemiptera: Fulgoromorpha)
Published 2021-01-01“…All protein-coding genes (PCGs) started with a canonical ATN or GTG and ended with TAA or an incomplete stop codon single T. Except for two transfer RNAs (tRNAs; trnS1 and trnV) lacking a dihydrouridine arm in the four species and trnC lacking a dihydrouridine stem in the <i>Youtuus</i> species, the remaining tRNAs could fold into canonical cloverleaf secondary structures. …”
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2359
Comparative Mitogenomics Reveals Cryptic Species in <i>Sillago ingenuua</i> McKay, 1985 (Perciformes: Sillaginidae)
Published 2023-11-01“…Their nucleotide composition and codon usage were also similar. A phylogenetic analysis was performed based on 13 concatenated PCGs from eight <i>Sillago</i> species. …”
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2360
The Oligopeptide Permease Opp Mediates Illicit Transport of the Bacterial P-site Decoding Inhibitor GE81112
Published 2016-05-01“…GE81112 is a tetrapeptide antibiotic that binds to the 30S ribosomal subunit and specifically inhibits P-site decoding of the mRNA initiation codon by the fMet-tRNA anticodon. GE81112 displays excellent microbiological activity against some Gram-positive and Gram-negative bacteria in both minimal and complete, chemically defined, broth, but is essentially inactive in complete complex media. …”
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