Benchmarking Community-Wide Estimates of Growth Potential from Metagenomes Using Codon Usage Statistics by J. L. Weissman, Marie Peras, Tyler P. Barnum, Jed A. Fuhrman

Subjects: “…codon usage bias…”
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Human genes with relative synonymous codon usage analogous to that of polyomaviruses are involved in the mechanism of polyomavirus nephropathy by Yu Fan, Duan Guo, Duan Guo, Shangping Zhao, Qiang Wei, Yi Li, Tao Lin

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Codon decoding by orthogonal tRNAs interrogates the in vivo preferences of unmodified adenosine in the wobble position by Margaret A. Schmitt, Jillyn M. Tittle, John D. Fisk

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The Mutational Robustness of the Genetic Code and Codon Usage in Environmental Context: A Non-Extremophilic Preference? by Ádám Radványi, Ádám Kun

“…The amino acid compositions of proteins and corresponding codon usages are still under selection, which allows us to ask what kind of environment the standard genetic code is adapted to. …”
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Noncanonical usage of stop codons in ciliates expands proteins with structurally flexible Q-rich motifs by Chi-Ning Chuang, Hou-Cheng Liu, Tai-Ting Woo, Ju-Lan Chao, Chiung-Ya Chen, Hisao-Tang Hu, Yi-Ping Hsueh, Ting-Fang Wang

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Oxidative stress strongly restricts the effect of codon choice on the efficiency of protein synthesis in Escherichia coli by Lorenzo Eugenio Leiva, Lorenzo Eugenio Leiva, Lorenzo Eugenio Leiva, Sara Elgamal, Sebastian A. Leidel, Omar Orellana, Michael Ibba, Assaf Katz

Subjects: “…codon usage…”
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Codon optimization regulates IgG3 and IgM expression and glycosylation in N. benthamiana by Lin Sun, Somanath Kallolimath, Roman Palt, Florian Eminger, Richard Strasser, Herta Steinkellner

Subjects: “…codon usage…”
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The Role of Codon Usage, tRNA Availability, and Cell Proliferation in EBV Latency and (Re)Activation by Darja Kanduc

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Is there a biological plausability for p53 codon 72 polymorphism influence on cervical cancer development? by Hugo Sousa, Alexandra M Santos, Daniela Pinto, Rui Medeiros

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Comparative Analysis of Codon Usage Patterns in Nuclear and Chloroplast Genome of <i>Dalbergia</i> (Fabaceae) by Zu-Kai Wang, Yi Liu, Hao-Yue Zheng, Min-Qiang Tang, Shang-Qian Xie

“…Our results showed that the synonymous and optimal codons in the coding regions of both nuclear and chloroplast genome of <i>Dalbergia</i> preferred ending with A/U at the third codon base. …”
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A CUG codon-adapted anchor-away toolkit for functional analysis of genes in Candida albicans by Basharat Bashir Teli, Priyanka Nagar, Yumnam Priyadarshini, Poonam Poonia, Krishnamurthy Natarajan

“…The FKBP12 and the FRB coding sequences were then CUG codon-adapted for C. albicans by site-directed mutagenesis. …”
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Codon usage biases co-evolve with transcription termination machinery to suppress premature cleavage and polyadenylation by Zhipeng Zhou, Yunkun Dang, Mian Zhou, Haiyan Yuan, Yi Liu

Subjects: “…codon usage…”
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Modulation of Viral Programmed Ribosomal Frameshifting and Stop Codon Readthrough by the Host Restriction Factor Shiftless by Sawsan Napthine, Chris H. Hill, Holly C. M. Nugent, Ian Brierley

“…SHFL also reduced the efficiency of stop-codon readthrough at the murine leukemia virus <i>gag/pol</i> signal. …”
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JUN mRNA translation regulation is mediated by multiple 5' UTR and start codon features. by Angélica M González-Sánchez, Eimy A Castellanos-Silva, Gabriela Díaz-Figueroa, Jamie H D Cate

“…In addition to its interaction site with eIF3, the JUN 5' UTR is nearly one kilobase in length, and has a high degree of secondary structure, high GC content, and an upstream start codon (uAUG). This motivated us to explore the complexity of JUN mRNA translation regulation in human cells. …”
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Start codon disruption with CRISPR/Cas9 prevents murine Fuchs’ endothelial corneal dystrophy by Hironori Uehara, Xiaohui Zhang, Felipe Pereira, Siddharth Narendran, Susie Choi, Sai Bhuvanagiri, Jinlu Liu, Sangeetha Ravi Kumar, Austin Bohner, Lara Carroll, Bonnie Archer, Yue Zhang, Wei Liu, Guangping Gao, Jayakrishna Ambati, Albert S Jun, Balamurali K Ambati

“…There were no adverse sequelae on histology or electroretinography. Col8a2 start codon disruption represents a non-surgical strategy to prevent vision loss in early-onset FECD. …”
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Correction: Optimization of the standard genetic code according to three codon positions using an evolutionary algorithm. by Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz

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Oligodendrocyte differentiation alters tRNA modifications and codon optimality-mediated mRNA decay by Sophie Martin, Kevin C. Allan, Otis Pinkard, Thomas Sweet, Paul J. Tesar, Jeff Coller

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Evaluation of polymorphism of P53 protein codon 72 in oral lichen planus by PCR technique by Seyed Hosein Tabatabaei, Mohammad Hasan Sheikhha, Mahammad Hasan Akhavan Karbasi, Sedighe Zarmehi, Mehdi Hoseini

Subjects: “…codon 72…”
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Analysis of Codon Usage of Speech Gene <i>FoxP2</i> among Animals by Tarikul Huda Mazumder, Ali M. Alqahtani, Taha Alqahtani, Talha Bin Emran, Afaf A. Aldahish, Arif Uddin

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A systematically-revised ribosome profiling method for bacteria reveals pauses at single-codon resolution by Fuad Mohammad, Rachel Green, Allen R Buskirk

“…In eukaryotes, ribosome profiling provides insight into the mechanism of protein synthesis at the codon level. In bacteria, however, the method has been more problematic and no consensus has emerged for how to best prepare profiling samples. …”
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