Enhanced therapeutic efficacy of Listeria-based cancer vaccine with codon-optimized HPV16 E7 by Feifei Duan, Jiaqi Chen, Hao Yao, Yuting Wang, Yanyan Jia, Zhiting Ling, Youwei Feng, Zhiming Pan, Yuelan Yin, Xin’An Jiao

Subjects: “…codon-optimized e7…”
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Influenza Virus Carrying a Codon-Reprogrammed Neuraminidase Gene as a Strategy for Live Attenuated Vaccine by Ji Dong, Zhenyuan Dong, Pei Feng, Yu Gao, Jiashun Li, Yang Wang, Lujie Han, Zhixia Li, Qian Wang, Xuefeng Niu, Chufang Li, Weiqi Pan, Ling Chen

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Synonymous codon usage bias in plant mitochondrial genes is associated with intron number and mirrors species evolution. by Wenjing Xu, Tian Xing, Mingming Zhao, Xunhao Yin, Guangmin Xia, Mengcheng Wang

“…Synonymous codon usage bias (SCUB) is a common event that a non-uniform usage of codons often occurs in nearly all organisms. …”
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Codon optimization, expression in Escherichia coli, and immunogenicity analysis of deformed wing virus (DWV) structural protein by Dongliang Fei, Yaxi Guo, Qiong Fan, Ming Li, Li Sun, Mingxiao Ma, Yijing Li

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Calculating site-specific evolutionary rates at the amino-acid or codon level yields similar rate estimates by Dariya K. Sydykova, Claus O. Wilke

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Differential Synonymous Codon Selection in the B56 Gene Family of PP2A Regulatory Subunits by Gabriel Corzo, Claire E. Seeling-Branscomb, Joni M. Seeling

Subjects: “…codon usage bias…”
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Bit Incorporated Codon Positional Encoder (BICPE) Algorithm for Privacy Preservation in Vertically Partitioned Data in Cloud by Yogasini Manithurai, Prathibha Badhravati Nagaraju

“…The proposed BICPE algorithm encrypts the transactional data into A, C, G, T codons to upgrade the safety of the transactional items by replacement, operation, and intricacy. …”
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Somatic Functional Deletions of Upstream Open Reading Frame-Associated Initiation and Termination Codons in Human Cancer by Lara Jürgens, Felix Manske, Elvira Hubert, Tabea Kischka, Lea Flötotto, Oliver Klaas, Victoria Shabardina, Christoph Schliemann, Wojciech Makalowski, Klaus Wethmar

“…We found that 66.5% of patient samples were affected by at least one of 5277 recurrent uORF-associated somatic single nucleotide variants altering 446 uAUG, 347 uStop, and 4733 aTIS codons. While twelve uORF variants were detected in all entities, 17 variants occurred in all five types of solid cancer analyzed here. …”
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Computational Analysis of a Prebiotic Amino Acid Synthesis with Reference to Extant Codon–Amino Acid Relationships by Tolga Yaman, Jeremy N. Harvey

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Support vector machine for classification of meiotic recombination hotspots and coldspots in <it>Saccharomyces cerevisiae </it>based on codon composition by Sun Xiao, Weng Jianhong, Zhou Tong, Lu Zuhong

“…Our results indicate that neither codon usage bias nor amino acid composition taken separately performed as well as codon composition. …”
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Biological Activity of Optimized Codon Bovine Type III Interferon Expressed in <i>Pichia pastoris</i> by Ran An, Runxiang Zhang, Yongli Guo, Jinfeng Geng, Minglu Si, Shuangfeng Wang, Mingchun Gao, Junwei Wang

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Heterologous protein expression is enhanced by harmonizing the codon usage frequencies of the target gene with those of the expression host. by Evelina Angov, Collette J Hillier, Randall L Kincaid, Jeffrey A Lyon

“…Synonymous codon replacement can change protein structure and function, indicating that protein structure depends on DNA sequence. …”
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Flavivirus genome recoding by codon optimisation confers genetically stable in vivo attenuation in both mice and mosquitoes. by Wei-Xin Chin, Hao Yuin Kong, Isabelle Xin Yu Zhu, Zi Yun Teo, Regina Faruk, Regina Ching Hua Lee, Si Xian Ho, Zhen Qin Aw, Bowen Yi, Xin Jun Hou, Antson Kiat Yee Tan, Thinesshwary Yogarajah, Roland G Huber, Yu Cai, Yue Wan, Justin Jang Hann Chu

“…Prior flavivirus genome recoding attempts utilised codon deoptimisation approaches. However, these codon deoptimisation approaches act in a species dependent manner and were unable to confer flavivirus attenuation in mosquito cells or in mosquito animal models. …”
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Identification of optimal codons and analysis of phylogenetic relationship in Osteochilus salsburyi (Teleostei: Cypriniformes) based on complete mitogenome by Cheng Zhang, Shun Zhang, Zhe Tian, Danli Wang, Shanliang Xu, Shanliang Xu

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Pandemic influenza A virus codon usage revisited: biases, adaptation and implications for vaccine strain development by Goñi Natalia, Iriarte Andrés, Comas Victoria, Soñora Martín, Moreno Pilar, Moratorio Gonzalo, Musto Héctor, Cristina Juan

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Eukaryotic release factor 1 from Euplotes promotes frameshifting at premature stop codons in human cells by Bozhidar-Adrian Stefanov, Elvis Ajuh, Sarah Allen, Mariusz Nowacki

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Mitogenomic Codon Usage Patterns of Superfamily Certhioidea (Aves, Passeriformes): Insights into Asymmetrical Bias and Phylogenetic Implications by Hengwu Ding, De Bi, Shiyun Han, Ran Yi, Sijia Zhang, Yuanxin Ye, Jinming Gao, Jianke Yang, Xianzhao Kan

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Focus on <i>RAS</i> Codon 61 Mutations in Metastatic Colorectal Cancer: A Retrospective Analysis by Francesco Schietroma, Annunziato Anghelone, Giustina Valente, Viria Beccia, Giulia Caira, Alexia Spring, Giovanni Trovato, Armando Di Bello, Anna Ceccarelli, Laura Chiofalo, Serena Perazzo, Maria Bensi, Angelo Minucci, Andrea Urbani, Luigi Maria Larocca, Michele Basso, Carmelo Pozzo, Lisa Salvatore, Maria Alessandra Calegari, Giampaolo Tortora

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Compositional properties and codon usage pattern of mitochondrial cytochrome c oxidase I gene among potamidids by Zulfa I Shabani, Prosper L Mfilinge, Fulgence N Mpenda

Subjects: “…Codon usage…”
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Evaluation of Aminoglycoside and Non-Aminoglycoside Compounds for Stop-Codon Readthrough Therapy in Four Lysosomal Storage Diseases. by Marta Gómez-Grau, Elena Garrido, Mónica Cozar, Víctor Rodriguez-Sureda, Carmen Domínguez, Concepción Arenas, Richard A Gatti, Bru Cormand, Daniel Grinberg, Lluïsa Vilageliu

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