On ribosome load, codon bias and protein abundance. by Stefan Klumpp, Jiajia Dong, Terence Hwa

“…Different codons encoding the same amino acid are not used equally in protein-coding sequences. …”
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Codon Usage Profiling of Chloroplast Genome in Juglandaceae by Yajun Zeng, Lianwen Shen, Shengqun Chen, Shuang Qu, Na Hou

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Codon Distribution in Error-Detecting Circular Codes by Elena Fimmel, Lutz Strüngmann

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Codon pair bias in prokaryotic and eukaryotic genomes by Stansfield Ian, Buchan Ross

Synonymous codon usage regulates translation initiation by Chloe L. Barrington, Gabriel Galindo, Amanda L. Koch, Emma R. Horton, Evan J. Morrison, Samantha Tisa, Timothy J. Stasevich, Olivia S. Rissland

“…Summary: Nonoptimal synonymous codons repress gene expression, but the underlying mechanisms are poorly understood. …”
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Recombination, meiotic expression and human codon usage by Fanny Pouyet, Dominique Mouchiroud, Laurent Duret, Marie Sémon

Subjects: “…codon Usage…”
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Comprehensive Analysis of Codon Usage on Porcine Astrovirus by Huiguang Wu, Zhengyu Bao, Chunxiao Mou, Zhenhai Chen, Jingwen Zhao

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Codon optimization underpins generalist parasitism in fungi by Thomas Badet, Remi Peyraud, Malick Mbengue, Olivier Navaud, Mark Derbyshire, Richard P Oliver, Adelin Barbacci, Sylvain Raffaele

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Evolutionary Dynamics of Abundant Stop Codon Readthrough by Fields, Gabriel, Lin, Michael F., Jungreis, Irwin, Chan, Clara S., Waterhouse, Robert, Kellis, Manolis

“…Using improved comparative genomics methods for detecting readthrough, we identify evolutionary signatures of conserved, functional readthrough of 353 stop codons in the malaria vector, Anopheles gambiae, and of 51 additional Drosophila melanogaster stop codons, including several cases of double and triple readthrough and of readthrough of two adjacent stop codons. …”
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Engineering exclusively-quadruplet codon translation in vivo by DeBenedictis, Erika Alden.

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Codon Constraints on Closed 2D Shapes by Richards, Whitman, Hoffman, Donald D.

“…Codons are simple primitives for describing plane curves. …”
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Forces acting on codon bias in malaria parasites by Sinha, I, Woodrow, C

“…Malaria parasite genomes have a range of codon biases, with Plasmodium falciparum one of the most AT-biased genomes known. …”

Genes Common in Primary Immunodeficiencies and Cancer Display Overrepresentation of Codon CTG and Dominant Role of Selection Pressure in Shaping Codon Usage by Rekha Khandia, Taha Alqahtani, Ali M. Alqahtani

“…The dinucleotide TpA adversely affected protein expression, while CpG did not. The CTG codon was the most overrepresented codon in 80.95% of genes. …”
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Comments on the origin of the genetic code: a 27-codon hypothetical precursor of an intricate 64-codon intermediate shaped the modern code by Weissenbach, Jean

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Codon-Precise, Synthetic, Antibody Fragment Libraries Built Using Automated Hexamer Codon Additions and Validated through Next Generation Sequencing by Laura Frigotto, Matthew E. Smith, Christopher Brankin, Ashni Sedani, Simon E. Cooper, Nisha Kanwar, Daniel Evans, Stanislava Svobodova, Claudia Baar, Jacob Glanville, Christopher G. Ullman, Anna V. Hine

“…We have previously described ProxiMAX, a technology that enables the fabrication of precise, combinatorial gene libraries via codon-by-codon saturation mutagenesis. ProxiMAX was originally performed using manual, enzymatic transfer of codons via blunt-end ligation. …”
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Re-introducing non-optimal synonymous codons into codon-optimized constructs enhances soluble recovery of recombinant proteins from Escherichia coli. by Jennifer Konczal, Justin Bower, Christopher H Gray

“…This, in turn, has increased the application of codon-optimized cDNAs where codons rarely used by Escherchia coli are replaced with common synonymous codons to accelerate translation of the target. …”
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Experimental Test of L- and D-Amino Acid Binding to L- and D-Codons Suggests that Homochirality and Codon Directionality Emerged with the Genetic Code by Robert Root-Bernstein

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Analysis of Codon Usage Bias in the Genome of Trichoderma reesei by Xin YANG, Lina QIN, Xianzhang JIANG

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Strategies and Patterns of Codon Bias in Molluscum Contagiosum Virus by Rahul Raveendran Nair, Manikandan Mohan, Gudepalya R. Rudramurthy, Reethu Vivekanandam, Panayampalli S. Satheshkumar

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Genetic Code Expansion: Another Solution to Codon Assignments by Kensaku Sakamoto

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