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4341
Complete mitochondrial genome and the phylogenetic position of the Sphaeroma sp. (Crustacea, Isopod, Sphaeromatidae)
Published 2019-07-01“…The nucleotide composition was 25.80% A, 16.56% C, 25.94% G and 31.67% T. Six initiation codons (ATA, ATC, ATG, ATT, ACG, GTG) and three termination codons (TAA, TAG, TA–) were used in the protein-coding genes. …”
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4342
The complete mitochondrial genome of the cigarette beetle, Lasioderma serricorne (Coleoptera: Anobiidae)
Published 2017-12-01“…ATG, ATA, ATT, ATC, TTG were initiation codons and TAA, TAG, T were termination codons. All 22 tRNA genes were predicted with a typical cloverleaf structure except for trnS1 (AGN). …”
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4343
The complete mitochondrial genome of the Argentine red shrimp Pleoticus muelleri (Bate, 1888) (Crustacea, Decapoda, Solenoceridae)
Published 2018-07-01“…Its mitogenome (16,189 bp) encoded the canonical 13 protein-coding genes, 22 tRNA genes, two rRNA genes. Start codons of all protein-coding genes were ATN except for ATP8, while incomplete stop codons (T–) were identified in six genes including COXI, COXII, COXIII, NAD3, NAD5, and NAD6. …”
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4344
Characterization of the complete mitochondrial genome of the Northern Mud Gudgeon, Ophiocara porocephala (Perciformes: Eleotridae) with phylogenetic implications
Published 2021-03-01“…A complete circular mitogenome of O. porocephala (16,529 bp) consisted of 13 protein-coding genes, 22 transfer RNAs, two ribosomal RNAs, and two non-coding regions, including a control region (D-loop) and a light strand origin of replication (OL). Two start codons (ATG and GTG) and four stop codons (TAG, TAA, TA–, and T–) were used in all the PCGs. …”
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4345
Characterization and phylogenetic analysis of the complete mitochondrial genome from Rock Scallop (Crassadoma gigantea) using next-generation sequencing
Published 2018-07-01“…Gene annotations, including gene order, genetic code, start and stop codons and codons bias, were identified. Phylogenetic tree was constructed using Neighbor-Joining (NJ) method based on the PCGs showed the present species clustered within the Pteriomorphia clade. …”
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4346
The complete mitochondrial genome of Sinopodisma hengshanica (Orthoptera: Acrididae) and its phylogenetic implication
Published 2022-04-01“…All PCGs are initiated by typical ATN codons, and terminated with harboring complete stop codons TAA and TAG. …”
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4347
The complete mitochondrial genome of Corythoxestis sunosei (Lepidoptera: Gracillariidae) with phylogenetic consideration
Published 2020-07-01“…ATG, ATT, CGA were initiation codons and TAA and T were termination codons. All the 22 tRNAs displayed a common cloverleaf secondary structure, except for trnS1 which lacked the dihydrouracil (DHU) arm. …”
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4348
The complete mitogenome of Paratanakia chii (Cypriniformes; Cyprinidae)
Published 2023-04-01“…The majority of PCGs have AT- (Met) start codons and TA- end codons. The A + T contents of the genome, PCGs, transfer RNAs (tRNAs), and ribosomal RNAs (rRNAs) are 56.92%, 58.07%, 56.34%, and 54.21%, respectively. …”
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4349
A new integrated symmetrical table for genetic codes
Published 2016“…Degeneracy is a salient feature of genetic codes, because there are more codons than amino acids. The conventional table for genetic codes suffers from an inability of illustrating a symmetrical nature among genetic base codes. …”
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Journal Article -
4350
Isolation and characterisation of major histocompatibility complex gene class I and II in Malayan tapir (Tapirus indicus Desmarest)
Published 2019“…This study characterise the MHC peptide-binding region (PBR) of the MHC class I and II gene in Malayan tapir by isolating the DNA, amplify the targeted region by PCR, cloning and sequencing; investigate if there is evidence of balancing selection by calculating the rate of non-synonymous (dN) and synonymous (dS) substitutions using MEGA and PAML and study its relationship with homologous genes of other species based on phylogenetic tree construction alongside two DRA, two DQA, three DRB and three DQB of class II alleles were evidence of selection with dN /dS > 1. A total of 24 codons within exon 2 DRB gene were found to be under selection with ten of the codons under positive selection sites (PSS) are part of the codons forming the Antigen Binding Site (ABS). …”
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Thesis -
4351
Characterization of the complete mitogenome of brown-spotted locust, Cyrtacanthacris tatarica (Orthoptera: Acrididae: Cyrtacanthacridinae)
Published 2022-04-01“…All PCGs used standard ATN initiation codons, and most PCGs were terminated with complete codons (TAA/TAG), apart from cox1 and nad5. …”
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4352
The complete mitochondrial genome of Smaragdina nigrifrons (Coleoptera: Eumolpidae): characterization and phylogenetic position
Published 2019-07-01“…All 13 PCGs are initiated with the typical ATN codons, and are terminated with either the complete TAA/TAG codons or a single T residue. …”
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4353
Characterization of the complete mitochondrial genome of Inara alboguttata (Hemiptera: Reduviidae)
Published 2018-07-01“…Protein-coding genes all initiate with ATN codons and most of them terminate with TAA or TAG codons, whereas COI, ND3, and ND5 use a single T residue. …”
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4354
The complete mitogenome of the Roman snail Helix pomatia Linnaeus 1758 (Stylommatophora: Helicidae)
Published 2019-01-01“…All protein coding genes could be annotated with proper start and stop codons (no completion of stop codons by polyadenylation). …”
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4355
Effects of Trypanosoma brucei tryptophanyl-tRNA synthetases silencing by RNA interference
Published 2007-09-01“…To allow decoding of the mitochondrial UGA codons as tryptophan, the tRNA Trp(CCA) anticodon is changed to UCA by an editing event. …”
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4356
Complete mitochondrial genome and phylogenetic analysis of Argiope perforata (Araneae: Araneidae)
Published 2019-01-01“…ATT, ATA, TTA, TTG were initiation codons and TAA, TAG, and T were termination codons. …”
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4357
The complete mitochondrial genome of the Capsaloides cristatus (Platyhelminthes, Monogenea), a pathogen of the sailfish (Istiophorus platypterus)
Published 2021-03-01“…There were two kinds of start codons (ATG and GTG) and three kinds of terminated codons (TAA, TAG and TGA) in the 12 protein-coding genes. …”
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4358
Complete mitochondrial genome and the phylogenetic position of the stellate puffer (Arothron stellatus)
Published 2019-07-01“…In the protein-coding genes, two start codons (GTG and ATG) and two stop codons (TAG and TAA/TA/T) were found. …”
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4359
Complete mitochondrial genome and the phylogenetic position of a wood-boring Isopod Sphaeroma terebrans (Crustacea, Isopod, Sphaeromatidae)
Published 2019-01-01“…The overall base composition was 30.1% A, 14.9% C, 21.3% G, and 33.7% T. Six start codons (ATA, ATC, ATG, ATT, ACG, GTG) and three stop codons (TAA, TAG, T–) were found in the protein-coding genes. …”
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4360
Complete mitochondrial genome of Pseudoechthistatus hei (Coleoptera: Cerambycidae: Lamiinae) and its phylogenetic analysis
Published 2022-11-01“…The PCGs initiated with the typical ATN (Met) start codons, and were terminated by typical TAN stop codons. …”
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