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4501
Symmetrical Properties of Graph Representations of Genetic Codes: From Genotype to Phenotype
Published 2018-09-01“…We analyzed the symmetries of the graphs of codons and their respective phenotypic graph representation spanned by the RNY (R purines, Y pyrimidines, and N any of them) code, two RNA Extended codes, the SGC, as well as three different mitochondrial genetic codes from yeast, invertebrates, and vertebrates. …”
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4502
Revealing the complete mitochondrial genome of Thermophis baileyi Wall, 1907 (Reptilia: Colubridae) through the next-generation sequencing
Published 2017-12-01“…Coding genes of each protein in the mtDNA had the same start and stop codons among three Thermophis species.…”
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4503
The complete mitochondrial genome of Cerceris bucculata (Hymenoptera: Crabronidae)
Published 2021-07-01“…All the 13 PCGs begin with typical ATN codons. Among them, eleven PCG genes terminate with TAA, two with T––. …”
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4504
The complete mitochondrial genome of Cerceris quinquefasciata (Hymenoptera: Crabronidae)
Published 2021-07-01“…All the 13 PCGs begin with typical ATN codons. Among them, eleven PCG genes terminate with TAA, two with T–. …”
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4505
The complete chloroplast genome of the invasive fern Lygodium microphyllum (Cav.) R. Br.
Published 2018-07-01“…Thirty-three genes contained internal stop codons, a common feature in Leptosporangiate fern genomes. …”
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4506
Different patterns of pfcrt and pfmdr1 polymorphism in Plasmodium falciparum isolates from Tehama region, Yemen
Published 2016-07-01“…A molecular investigation of 10 codons of pfcrt (72–76, 220, 271, 326, 356, and 371) and five codons of pfmdr1 (86, 184, 1034, 1042, and 1246) was conducted on P. falciparum isolates from districts with the highest malaria endemicity in the Hodeidah and Al-Mahwit governorates in Tehama region, Yemen. …”
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4507
DNA Movies and Panspermia
Published 2011-10-01“…Synthetic biology might be used to write an epitaph to our species, or simply “Kilroy was here”, in the genome of a bacterium via the patterns of either (1) the codons to exploit Life's non-equilibrium character or (2) the bases themselves to exploit Life's quasi-equilibrium character. …”
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4508
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4509
Determining the Evolutionary Characteristics and Genetic Structure of the Isolates of Beet Curly Top Iran Virus Based on the V2 Gene
Published 2023-11-01“…Total number of 26 positions among the codons showed a positive value of dN/dS ratio, while 34 positions had a negative value. …”
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4510
Heterogeneous Distribution of Genetic Mutations in Myosin Binding Protein-C Paralogs
Published 2022-06-01“…Arginine and glutamate were the top hits in fMyBP-C and cMyBP-C, respectively, and tryptophan and tyrosine were the most common among the three paralogs changing to premature stop codons and causing protein truncations at the carboxyl terminus. …”
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4511
The complete mitochondrial genome of Indomegoura indica (Hemiptera: Aphididae)
Published 2019-01-01“…All PCGs were initiated with standard ATN codons and terminated with TAA except for cox1 and nad4. …”
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4512
The complete mitochondrial genome of Triplophysa tibetana
Published 2019-01-01“…The protein-coding genes started with a traditional ATG except for COX1, which started with one infrequent GTG instead, and terminated with stop codons TAA, TGG, TGA, or a single T— base. The overall GC content is lower than AT. …”
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4513
Adeno-associated viral delivery of engineered tRNA-enzyme pairs into nonsense mutation mouse models
Published 2023-03-01“…Summary: In this protocol, we describe how to utilize the unnatural amino acid (UAA) incorporation system to read through endogenous premature termination codons in a Duchenne muscular dystrophy mouse model. …”
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4514
The complete mitochondrial genome of Wolfiporia cocos (Polypolales: Polyporaceae)
Published 2019-01-01“…Additional six protein-coding genes (cob, cox1, cox2, cox3, nad2, nad6) were truncated or pseudogenized by internal stop codons. Phylogenetic analysis of the mitochondrial genome of W. cocos showed the distinct relationship with other five mitochondrial genomes of Polyporales.…”
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4515
Characterization and phylogenetic analysis of the complete mitochondrial genome of a tropical sea cucumber, Holothuria fuscocinerea
Published 2020-07-01“…The PCGs were initiated by four initiation codons (ATG, TAC, ATC, and ATA). Only one PCG (nad6) and five tRNA genes (tRNASer(UCN), tRNAGln, tRNAAla, tRNAVal, and tRNAAsp) were encoded on the light chain, and the other genes were encoded on the heavy chain. …”
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4516
The complete mitochondrial genome of an Asian crested ibis Nipponia nippon (Pelecaniformes, Threskiornithidae) from South Korea
Published 2019-07-01“…The nucleotide composition is slightly biased with A + T contents of 53.79% (A, T, C, and G was 30.37%, 23.42%, 31.99%, and 14.22%, respectively). 11 PCGs are initiated by ATN codons, except for cox1 and cox2 with GTG instead. …”
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4517
Complete mitochondrial genome of the hard clam (Mercenaria mercenaria)
Published 2019-07-01“…Of 13 PCGs, 3 genes (cox3, nad3, and cox2) had incomplete stop codons. Furthermore, phylogenetic analysis using 12 PCGs (except atp8) figured out that M. mercenaria was closely related to genus Dosinia. …”
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4518
Evolution and comparative genomics of odorant- and pheromone-associated genes in rodents.
Published 2004“…These families were chosen on the basis of multiple gene duplications since the common ancestor of rat and mouse. For each family, codons were identified that are likely to have been subject to adaptive evolution. …”
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4519
Molecular Epidemiology and Treatment Patterns of Patients With EGFR Exon 20-Mutant NSCLC in the Precision Oncology Era: The European EXOTIC Registry
Published 2023-01-01“…Insertions and duplications were located mainly in the near loop (codons 767–771, 83.1%) and the far loop (codons 771–775, 13%) and only in 3.9% within the C helix (codons 761–766). …”
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4520
Mitochondrial genome organization and vertebrate phylogenetics
Published 2000-01-01“…Other features such as the secondary structure of tRNA, and the start and stop codons of protein-coding genes may also be useful in comparisons of vertebrate mitochondrial genomes.…”
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