Identification of the optimal codons for acetolactate synthase from weeds: an in-silico study by Madhab Kumar Sen, Kateřina Hamouzová, Sunil Kanti Mondal, Josef Soukup

“…Although various studies of codon usage bias have been reported in a broad spectrum of organisms, no studies to date have examined codon usage bias for herbicide target genes. …”
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tRNA-mediated codon-biased translation in mycobacterial hypoxic persistence by Chionh, Yok Hian, McBee, Megan, Babu, I. Ramesh, Hia, Fabian, Lin, Wenwei, Zhao, Wei, Cao, Jianshu, Dziergowska, Agnieszka, Malkiewicz, Andrzej, Begley, Thomas J., Alonso, Sylvie, Dedon, Peter C.

“…Codon re-engineering of dosR exaggerates hypoxia-induced changes in codon-biased DosR translation, with altered dosR expression revealing unanticipated effects on bacterial survival during hypoxia. …”
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Precise Manipulation of Chromosomes in Vivo Enables Genome-Wide Codon Replacement by Isaacs, Farren J, Carr, Peter A, Wang, Harris H, Lajoie, Marc J, Sterling, Bram, Kraal, Laurens, Tolonen, Andrew C, Gianoulis, Tara A, Goodman, Daniel B, Reppas, Nikos B, Emig, Christopher J, Bang, Duhee, Hwang, Samuel J, Jewett, Michael C, Jacobson, Joseph M, Church, George M

“…We used multiplex automated genome engineering (MAGE) to site-specifically replace all 314 TAG stop codons with synonymous TAA codons in parallel across 32 Escherichia coli strains. …”
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Short report: codon 125 polymorphism of CD31 and susceptibility to malaria. by Casals-Pascual, C, Allen, S, Allen, A, Kai, O, Lowe, B, Pain, A, Roberts, D

“…We analyzed data from 442 cases and controls from Papua New Guinea and data from 396 cases and controls from Kenya. The codon 125 polymorphism was not associated with severe malaria in either study. …”

Dietary nitrogen alters codon bias and genome composition in parasitic microorganisms by Seward, E, Kelly, S

“…However the impact of the relative availability of dietary nitrogen on genome composition and codon bias is poorly understood.</p> <p> <strong>Results:</strong> Here we show that differential nitrogen availability, due to differences in environment and dietary inputs, is a major determinant of genome nucleotide composition and synonymous codon use in both bacterial and eukaryotic microorganisms. …”

A small stretch of poor codon usage at the beginning of dengue virus open reading frame may act as a translational checkpoint by Maneenop Yimyaem, Kunlakanya Jitobaom, Prasert Auewarakul

Subjects: “…Rare codon…”
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A Synthetic Biology Approach for Vaccine Candidate Design against Delta Strain of SARS-CoV-2 Revealed Disruption of Favored Codon Pair as a Better Strategy over Using Rare Codons by Pankaj Gurjar, Noushad Karuvantevida, Igor Vladimirovich Rzhepakovsky, Azmat Ali Khan, Rekha Khandia

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Estudo do polimorfismo de p53 no códon 72 em pacientes com câncer de mama Study of p53 codon 72 polymorphism in patients with breast cancer by Jussane Oliveira Vieira

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PRIMEIRO RELATO DE BETA TALASSEMIA INTERMÉDIA HETEROZIGOTA COMPOSTA PARA HBB:C.48G>A (CÓDON 15) E HBB:C.137C>T (CÓDON 87) by KC Piva, ACM Berti, IS Dias, LA Souz-Junior, GA Bernardino, L Gazarini, DGH Silva, E Belin-Júnior

“…O sequenciamento demonstrou duas mutações, ambas em heterozigose, HBB:c.48G>A (Códon 15) e HBB:c.137C>T (Códon 87), ou seja, uma de Beta0 e uma de Beta+ talassemia, respectivamente. …”
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Synchronized Oscillations in Double-Helix B-DNA Molecules with Mirror-Symmetric Codons by Enrique Maciá

“…The existence of synchronized collective oscillations of the base-pairs and their related codon triplet units are disclosed from the study of their coupled dynamical equations. …”
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Association between p53 codon 72 polymorphism and systemic lupus erythematosus by Mohammad Nabavi, Abbas Ghaderi, Mohammad Javad Fattahi, N. Danaie, R. Zangooie, Mohammad Faranoush

“…Conclusions: In an Iranian population the functional oncoprotein of p53 with codon 72 polymorphism may play an important role in the pathogenesis and clinical presentation of SLE.…”
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Codon Usage Provides Insights into the Adaptive Evolution of Mycoviruses in Their Associated Fungi Host by Qianqian Wang, Xueliang Lyu, Jiasen Cheng, Yanping Fu, Yang Lin, Assane Hamidou Abdoulaye, Daohong Jiang, Jiatao Xie

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Pan-cancer analyses of synonymous mutations based on tissue-specific codon optimality by Xia Ran, Jinyuan Xiao, Fang Cheng, Tao Wang, Huajing Teng, Zhongsheng Sun

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Different Patterns of Codon Usage and Amino Acid Composition across Primate Lentiviruses by Angelo Pavesi, Fabio Romerio

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Evolution of rat hepatitis E virus: recombination, divergence and codon usage bias by Liang Zhao, Yangmei Huang

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Analysis of synonymous codon usage patterns in sixty-four different bivalve species by Marco Gerdol, Gianluca De Moro, Paola Venier, Alberto Pallavicini

Subjects: “…Codon usage bias…”
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Identification and characterization of codon usage pattern and influencing factors in HFRS-causing hantaviruses by Fatima Noor, Usman Ali Ashfaq, Abu Bakar, Muhammad Qasim, Muhammad Shareef Masoud, Abdulrahman Alshammari, Metab Alharbi, Muhammad Shahid Riaz

“…The results indicated that most of the overrepresented codons had AU-endings, which revealed that mutational pressure is the major force shaping codon usage patterns. …”
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Comparative analysis of codon usage patterns in chloroplast genomes of ten Epimedium species by Yingzhe Wang, Dacheng Jiang, Kun Guo, Lei Zhao, Fangfang Meng, Jinglei Xiao, Yuan Niu, Yunlong Sun

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Rotavirus A Genome Segments Show Distinct Segregation and Codon Usage Patterns by Irene Hoxie, John J. Dennehy

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Comparative analysis of codon usage patterns in chloroplast genomes of six Euphorbiaceae species by Zhanjun Wang, Beibei Xu, Bao Li, Qingqing Zhou, Guiyi Wang, Xingzhou Jiang, Chenchen Wang, Zhongdong Xu

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