CoCoView - A codon conservation viewer via sequence logos by Beatriz Rodrigues Estevam, Diego Mauricio Riaño-Pachón

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Design and screening of degenerate-codon-based protein ensembles with M13 bacteriophage by Clausen, Griffin James.

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tRNA epitranscriptomics and biased codon are linked to proteome expression in Plasmodium falciparum by Dedon, Peter C., Preiser, Peter Rainer, Ng, Chee Sheng, Sinha, Ameya, Aniweh, Yaw, Nah, Qianhui, Babu, Indrakanti Ramesh, Gu, Chen, Chionh, Yok Hian

“…Quantitative analysis of ~2,100 proteins across the IDC revealed that up‐ and down‐regulated proteins in late but not early stages have a marked codon bias that directly correlates with parallel changes in tRNA modifications and enhanced translational efficiency. …”
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Inter-oligomer interactions of the human prion protein are modulated by the polymorphism at codon 129. by Gerber, R, Voitchovsky, K, Mitchel, C, Tahiri-Alaoui, A, Ryan, J, Hore, P, James, W

“…The common polymorphism at codon 129 in the human prion protein (PrP) has been shown in many studies to influence not only the pathology of prion disease but also the misfolding propensity of PrP. …”

RNA codons govern the mechanism of protein folding through the shape memory effect by Hou, Pin Yoong

“…Specifically, can RNA codons define the protein folding mechanism? This review will first present existing mechanisms for protein folding and their limitations. …”
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Screening <span style="font-variant: small-caps">l</span>-Lysine-Overproducing <i>Escherichia coli</i> Using Artificial Rare Codons and a Rare Codon-Rich Marker by Hui Liu, Cuiping Yang, Lu Yang, Ruiming Wang, Piwu Li, Bowen Du, Nan Li, Junqing Wang

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corseq: fast and efficient identification of favoured codons from next generation sequencing reads by Salvatore Camiolo, Andrea Porceddu

Subjects: “…Optimal codons…”
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Deciphering Codon Usage Patterns in Genome of <i>Cucumis sativus</i> in Comparison with Nine Species of Cucurbitaceae by Yuan Niu, Yanyan Luo, Chunlei Wang, Weibiao Liao

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Freqüência de mutação no códon 12 do gene K-ras no carcinoma ductal invasivo de mama Frequency of mutations at codon 12 of the K--ras gene in invasive ductal breast cancer by Sônia Maria Rolim Rosa Lima, Sebastião Piato, Roberto Euzébio dos Santos, Euclides Matheucci Junior, Osmar Monte

“…Objetivo: pesquisar a freqüência de mutação pontual no códon 12 do gene K-ras, em espécimes cirúrgicos de pacientes portadoras de carcinoma ductal invasivo de mama. …”
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Application of codon usage and context analysis in genes up- or down-regulated in neurodegeneration and cancer to combat comorbidities by Rekha Khandia, Megha Katare Pandey, Magdi E. A. Zaki, Sami A. Al-Hussain, Igor Baklanov, Pankaj Gurjar

Subjects: “…codon usage…”
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Investigation of P53 Codon 72 Polymorphism in Patients with Nonmelanoma Skin Cancers in Isfahan by Mehdi Nikbakht Dastjerdi, Meghdad Hasanzadeh, Ardeshir Talebi, Mojtaba Akbari

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Endogenous trans-translation structure visualizes the decoding of the first tmRNA alanine codon by David Teran, Ying Zhang, Andrei A. Korostelev

“…As tmRNA presents the first alanine codon via a non-canonical mRNA path in the ribosome, the incoming alanyl-tRNA must rearrange the tmRNA molecule to read the codon. …”
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Codon usage bias in chloroplast genes implicate adaptive evolution of four ginger species by Qian Yang, Cheng Xin, Qing-Song Xiao, Ya-Ting Lin, Li Li, Jian-Li Zhao

Subjects: “…codon usage bias…”
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2348 Lafora disease premature termination codons (PTCs) are likely candidates for suppression by aminoglycosides by Zoe R. Simmons, Amanda Sherwood, Selena Li, Sylvie Garneau-Tsodikova, Matthew Gentry

“…For 10% of patients with a genetic disease, a nonsense/STOP mutation/premature termination codon (PTC) is the underlying cause of their malady. …”
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Exploiting codon usage identifies intensity-specific modifiers of Ras/MAPK signaling in vivo. by Jessica K Sawyer, Zahra Kabiri, Ruth A Montague, Scott R Allen, Rebeccah Stewart, Sarah V Paramore, Erez Cohen, Hamed Zaribafzadeh, Christopher M Counter, Donald T Fox

“…In multiple contexts, we show that RpS21 preferentially influences weak Ras/MAPK signaling outputs. These data show that codon usage manipulation can identify new, output-specific signaling regulators, and identify RpS21 as an in vivo Ras/MAPK phenotypic regulator.…”
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Organisms with alternative genetic codes resolve unassigned codons via mistranslation and ribosomal rescue by Natalie Jing Ma, Colin F Hemez, Karl W Barber, Jesse Rinehart, Farren J Isaacs

“…Organisms possessing genetic codes with unassigned codons raise the question of how cellular machinery resolves such codons and how this could impact horizontal gene transfer. …”
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Comparative analysis of codon usage between Gossypium hirsutum and G. barbadense mitochondrial genomes by Zhiwen Chen, Jianguo Zhao, Jun Qiao, Weijia Li, Jingwei Li, Ran Xu, Haiyan Wang, Zehui Liu, Baoyan Xing, Jonathan F. Wendel, Corrinne E. Grover

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Correction: Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster by Joshua G Dunn, Catherine K Foo, Nicolette G Belletier, Elizabeth R Gavis, Jonathan S Weissman

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Codon-optimized TDP-43 mediates neurodegeneration in a Drosophila model of ALS/FTLD by Tanzeen Yusuff, Tanzeen Yusuff, Ya-Chu Chang, Ya-Chu Chang, Tzu-Kang Sang, Tzu-Kang Sang, George R. Jackson, George R. Jackson, George R. Jackson, George R. Jackson, George R. Jackson, Shreyasi Chatterjee, Shreyasi Chatterjee, Shreyasi Chatterjee

“…In a novel Drosophila melanogaster model, we report gain-of-function phenotypes due to misexpression of insect codon-optimized version of human wild-type TDP-43 (CO-TDP-43) using both the binary GAL4/UAS system and direct promoter fusion constructs. …”
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Senecavirus A Enhances Its Adaptive Evolution via Synonymous Codon Bias Evolution by Simiao Zhao, Huiqi Cui, Zhenru Hu, Li Du, Xuhua Ran, Xiaobo Wen

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