Epitranscriptomics : translational regulation of metabolism, drug resistance and proteostasis during cellular stress by Davis, Nick K.(Nicholas K.)

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POLIMORFISME GEN PfMDR1 DAN PfATP6 PADA ISOLAT PLASMODIUM DARI PENDERITA MALARIA FALCIPARUM DI KABUPATEN PESAWARAN by , JHONS FATRIYADI SUWANDI, , Prof. dr. Supargiyono, DTM H., SU., Ph.D.

“…There was one SNP of PfMDR1 at N86Y codon. There was not SNP at PfATP6 gene. Efeectivenes of DHP-PQ was still wellness than AAQ-PQ. …”

Clinical trial simulations based on genetic stratification and the natural history of a functional outcome measure in Creutzfeldt-Jakob disease by Mead, S, Burnell, M, Lowe, J, Thompson, A, Lukic, A, Porter, M, Carswell, C, Kaski, D, Kenny, J, Mok, T, Bjurstrom, N, Franko, E, Gorham, M, Druyeh, R, Wadsworth, J, Jaunmuktane, Z, Brandner, S, Hyare, H, Rudge, P, Walker, A, Collinge, J

“…Restricting to VV or MV codon 129 genotypes increased power even further. …”

Identification of candidate genes expressions and polymorphisms associated with atherosclerosis from postmortem cases in Hospital Kuala Lumpur and Hospital Serdang, Malaysia by Blin, Joan

“…No significant associations were identified in the C88S and TP53 codon 72 polymorphisms with regard to atherosclerosis risk. …”
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Characterization of the complete mitochondrial genome of Golden cusk, Sirembo imberbis (Ophidiiformes:Ophidiidae) by Nazia Tabassum, Yeonghye Kim, Hyun-Woo Kim

“…Among 13 protein-coding genes, unusual start codon (GTG) was exclusively identified in COX1, while the incomplete stop codons (TA- or T–) were detected in COX2, COX3, ND2, ND3, ND4 and CytB. …”
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Complete mitochondrial genome of coconut hispine beetle Brontispa longissima (Coleoptera: Chrysomelidae: Cassidinae) by Rui Meng, Su Ao, Wei Xu, Baoqian Lv, Bo Cai

“…All of the 22 tRNA genes displayed a typical clover-leaf structure, with the exception of tRNASer (TCT). 12 PCGs were initiated by ATN codons, and ND1 started with TTG. Eight PCGs used the typical stop codon ‘TAA’ and ‘TGA’, while five PCGs terminated with incomplete stop codons "T". …”
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In silico design and functional assessment of semisynthetic genes that confer tolerance to phosphinothricin by Jenny Paola Jiménez, Alejandro Chaparro Giraldo

“…This approach allows optimizing expression by modifying the codon usage. In this work there were designed and evaluated semi-synthetic versions of genes in Nicotiana benthamiana, these genes confer tolerance to the herbicide phosphinothricin. …”
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When a Synonymous Variant Is Nonsynonymous by Mauno Vihinen

“…A new term, unsense variant is defined as a substitution in the mRNA coding region that affects gene expression and protein production without introducing a stop codon in the variation site. Such variants are common and need to be correctly annotated. …”
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Characterization of the complete mitochondrial genome of Minois dryas (Lepidoptera: Nymphalidae: Satyrinae) with phylogenetic analysis by Qing-Hui Shi, Xue-Qin Lin, Xiong Ye, Jian-Hong Xing, Guo-Wen Dong

“…The mitogenome includes a cox1 gene with an atypical CGA(R) start codon and five genes (cox1, cox2, nad5, nad4, nad1) exhibiting incomplete stop codons. …”
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Phylogenetic analysis of the complete mitochondrial genome of the white peacock butterfly Anartia jatrophae saturata (Insecta: Lepidoptera: Nymphalidae) by Josephine E. Payment, Jeffrey M. Marcus, Melanie M. L. Lalonde

“…Anartia jatrophae COX1 features an atypical start codon (CGA); ATP6, COX1, ND1, ND4, ND4L, ND5, and ND6 exhibit incomplete stop codons completed in the mRNA by the addition of 3′ A residues. …”
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The complete mitochondrial genome of common greenshank Tringa nebularia by Fenli Zhang, Naiwen Zhang, Zhaoqin Huang, Qizhi Xiang, Wan Chen

“…Most of the PCGs began with the ATG as the start codon, and four kinds of termination codons were used in this mitogenome. …”
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DIFFERENTIAL DIAGNOSIS OF HEREDITARY SYNDROME OF HYPOCHOLESTEROLEMIA BY USING EXOMIC SEQUENCING by A. I. Yershova, N. V. Shcherbakova, A. A. Suvorova, E. Y. Hlebus, I. V. Sidonets, A. N. Meshkov, S. A. Boytsov

“…This mutation leads to a premature stop codon with violation of apolipoprotein B-100 synthesis and causes inherited monogenic disease - family hypobetalipoproteinemia.…”
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Good and Bad Neighbourhoods in Viral Sequence Space: Predicting, Altering, Targeting Virus Populations by Marco Vignuzzi

“…We then combined the resulting data with mathematical modelling to determine how virus populations occupy sequence space—a multidimensional hypercube that describes all combinations of nucleotide, codon, or amino acid sequences. In this study, we demonstrate how these experimental and computational approaches can help monitor, predict, alter, and even target virus evolution and population dynamics, creating new ways to study virus–host interactions and to innovate antiviral approaches. …”
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The complete mitochondrial genome of the jewel beetle Trachys variolaris (Coleoptera: Buprestidae) by Liangming Cao, Xiaoyi Wang

“…Twelve protein-coding genes initiate with ATN codons except ND1 uses TTG. Most of the protein-coding genes use TAA or TAG as the stop codon, but COII, COIII, ND4, and ND5 terminate with a single T–– or TA–. …”
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The mitochondrial genome of Paraahimia luodianensis (Hemiptera: Cicadellidae: Typhlocybinae), a new genus and species from China by Yuehua Song, Xiaowei Yuan, Can Li

“…Most of PCGs started with ATN and stopped with TAA, except for ATP8 started with TTG, COX2, COX3, NAD5, and NAD1 used incomplete T–– as a stop codon. We constructed a phylogenetic tree from 12 species (Hemiptera) based on neighbour-joining method and using 13 mitochondrial protein-coding genes. …”
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The complete mitochondrial genome of Platycheirus albimanus (Diptera: Syrphidae: Syrphinae) and phylogenetic analysis of the Syrphidae by Yan Yan, Li Hu

“…The 13 PCGs initiate with the start codon ATN, except for COX1 and ATP6 which use TTG. …”
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Determining the current prevalence of β-thalassemia variants in Jordan by Diya Hasan, Ahmad Al Tibi, George Burghel, Amid Abdelnour

“…In addition to three variants that had not been previously reported: -101 [C>T], IVS 1.130 [G>C], and codon 44 [-C]. Conclusions The results provide a new update on the existing Jordanian beta-thalassemia variant database that will aid the enhancement of diagnostic and treatment protocols for patients.…”
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Complete mitochondrial genome of Accipiter trivirgatus by Fengling Zhang, Lizhi Zhou, Yuanqiu Dong, Yunwei Song

“…All of the PCGs started with ATG codon, except for ND3 which was started with ATC. …”
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Mitochondrial genome of Neilupotamon papileonaceum, with its phylogenetic analysis by Gang Xiong, Xiao-Qing Wang, Xu Ping-yaun, Dan Zeng, Pei Wang, Zhen-Nian Chen, Li Kang

“…Most of the PCGs started with ATG and stopped with TAT, except for ATP8 and ND6 stopped with TGA, COX1, COX2, ND5, ND4, and ND4L used incomplete T as stop codon. The phylogeny tree is monophyletic among 15 related species. …”
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Gerstmann–Sträussler–Scheinker syndrome with early-onset spinocerebellar ataxia phenotype by E. P. Nuzhnyi, N. Y. Abramycheva, E. Y. Fedotova, S. N. Illarioshkin

“…The possible modifying role of polymorphism in codon 129 of the PRNP gene (129Val) in the disease phenotype formation, as well as the clinical findings and diagnostic methods of this syndrome are discussed.…”
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