Investigating the ability of deep learning-based structure prediction to extrapolate and/or enrich the set of antibody CDR canonical forms by Alexander Greenshields-Watson, Brennan Abanades, Charlotte M. Deane

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Hiding in plain sight: structure and sequence analysis reveals the importance of the antibody DE loop for antibody-antigen binding by Simon P. Kelow, Jared Adolf-Bryfogle, Roland L. Dunbrack

Subjects: “…antibody complementarity determining regions…”
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Extracellular domain of TREM2 possess two distinct ligand recognition sites: Insights from machine-learning guided docking and all-atoms molecular dynamics simulations by Sarbani Mishra, Preety Sthutika Swain, Sanghamitra Pati, Budheswar Dehury

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Reduction of therapeutic antibody self-association using yeast-display selections and machine learning by Emily K. Makowski, Hongwei Chen, Matthew Lambert, Eric M. Bennett, Nicole S. Eschmann, Yulei Zhang, Jennifer M. Zupancic, Alec A. Desai, Matthew D. Smith, Wenjia Lou, Amendra Fernando, Timothy Tully, Christopher J. Gallo, Laura Lin, Peter M. Tessier

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Do antibody CDR loops change conformation upon binding? by Chu’nan Liu, Lilian M. Denzler, Oliver E.C. Hood, Andrew C.R. Martin

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Discrete analysis of camelid variable domains: sequences, structures, and in-silico structure prediction by Akhila Melarkode Vattekatte, Nicolas Ken Shinada, Tarun J. Narwani, Floriane Noël, Olivier Bertrand, Jean-Philippe Meyniel, Alain Malpertuy, Jean-Christophe Gelly, Frédéric Cadet, Alexandre G. de Brevern

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Quantitative Description of Surface Complementarity of Antibody-Antigen Interfaces by Lorenzo Di Rienzo, Edoardo Milanetti, Edoardo Milanetti, Giancarlo Ruocco, Giancarlo Ruocco, Rosalba Lepore

Subjects: “…antibody complementarity determining regions…”
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ParaAntiProt provides paratope prediction using antibody and protein language models by Mahmood Kalemati, Alireza Noroozi, Aref Shahbakhsh, Somayyeh Koohi

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Humanization of Antibodies using a Statistical Inference Approach by Alejandro Clavero-Álvarez, Tomas Di Mambro, Sergio Perez-Gaviro, Mauro Magnani, Pierpaolo Bruscolini

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Temperature and Stretching Effects on Complementarity Determining Regions (CDRs) Conformation and Stability of Nimotuzumab F(ab)-Fragment by T.S. Humani, M.A. Martoprawiro, A. Mutalib

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Soluble T Cell Receptor Vβ Domains Engineered for High-Affinity Binding to Staphylococcal or Streptococcal Superantigens by Preeti Sharma, Ningyan Wang, David M. Kranz

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In Silico and Structural Analyses Demonstrate That Intrinsic Protein Motions Guide T Cell Receptor Complementarity Determining Region Loop Flexibility by Christopher J. Holland, Christopher J. Holland, Bruce J. MacLachlan, Valentina Bianchi, Valentina Bianchi, Sophie J. Hesketh, Sophie J. Hesketh, Richard Morgan, Owen Vickery, Anna M. Bulek, Anna Fuller, Andrew Godkin, Andrew K. Sewell, Pierre J. Rizkallah, Stephen Wells, David K. Cole, David K. Cole

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Fab Fragment of V_HH-Based Antibody Netakimab: Crystal Structure and Modeling Interaction with Cytokine IL-17A by Olga Kostareva, Ilya Kolyadenko, Andrey Ulitin, Victoria Ekimova, Stanislav Evdokimov, Maria Garber, Svetlana Tishchenko, Azat Gabdulkhakov

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Antisoma Application: A Fully Integrated V-Like Antibodies Platform by Louis Papageorgiou, Dimitrios Vlachakis

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Structure- and machine learning-guided engineering demonstrate that a non-canonical disulfide in an anti-PD-1 rabbit antibody does not impede antibody developability by Wei-Ching Liang, Hongkang Xi, Dawei Sun, Luigi D’Ascenzo, Jonathan Zarzar, Nicole Stephens, Ryan Cook, Yinyin Li, Zhengmao Ye, Marissa Matsumoto, Jian Payandeh, Matthieu Masureel, Yan Wu

Subjects: “…Complementarity determining regions (CDRs)…”
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Molecular, Biological and Structural Features of VL CDR-1 Rb44 Peptide, Which Targets the Microtubule Network in Melanoma Cells by Natalia Girola, Pedro T. Resende-Lara, Carlos R. Figueiredo, Carlos R. Figueiredo, Mariana H. Massaoka, Ricardo A. Azevedo, Rodrigo L. O. R. Cunha, Luciano Polonelli, Luiz R. Travassos, Luiz R. Travassos

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Construction and sequencing analysis of scFv antibody fragment derived from monoclonal antibody against norfloxacin (Nor155) by J. Mala, S. Puthong, H. Maekawa, Y. Kaneko, T. Palaga, K. Komolpis, S. Sooksai

Subjects: “…Complementarity determining region…”
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Investigating the IgM and IgG B Cell Receptor Repertoires and Expression of Ultralong Complementarity Determining Region 3 in Colostrum and Blood from Holstein-Friesian Cows at Cal... by Tess E. Altvater-Hughes, Harold P. Hodgins, Douglas C. Hodgins, Cathy A. Bauman, Marlene A. Paibomesai, Bonnie A. Mallard

Subjects: “…ultralong complementarity determining region 3…”
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Characteristics and Clinical Significance of T-Cell Receptor Repertoire in Hepatocellular Carcinoma by Zifei Wang, Zifei Wang, Zifei Wang, Yu Zhong, Yu Zhong, Zefan Zhang, Zefan Zhang, Kaiqian Zhou, Kaiqian Zhou, Zhihao Huang, Hao Yu, Longqi Liu, Longqi Liu, Shiping Liu, Shiping Liu, Huanming Yang, Jian Zhou, Jia Fan, Liang Wu, Liang Wu, Liang Wu, Liang Wu, Yunfan Sun, Yunfan Sun

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High‐throughput sequencing reveals the change of TCR α chain CDR3 with Takayasu arteritis by Bowen Zha, Lili Pan, Na Gao

Subjects: “…complementarity‐determining region 3…”
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