A comparative analysis of ENCODE and Cistrome in the context of TF binding signal by Perna, Stefano, Pinoli, Pietro, Ceri, Stefano, Wong, Limsoon

“…Background: With the rise of publicly available genomic data repositories, it is now common for scientists to rely on computational models and preprocessed data, either as control or to discover new knowledge. …”
Get full text

Crowd evacuation analysis using agent-based simulation by Seah, Kwang Beng

“…Understanding the crowd and representing it using computational modelling. CrowdTool allows behaviours to be represented using cognitive models and it simulates the human-like behaviour in different scenarios. …”
Get full text

Edge/cloud resource management for time-sensitive applications by Lim, Her Huey

“…Serverless computing, with its auto-scaling services and pay-per-use pricing model, has also gained popularity among users looking for a hassle-free cloud experience. However, these computing models are usually associated with greater latencies due to factors such as physical distance, server load, network congestion, and bandwidth limitations. …”
Get full text

Low-complexity video quality assessment using temporal quality variations by Narwaria, Manish, Lin, Weisi, Liu, Anmin

“…Objective video quality assessment (VQA) is the use of computational models to evaluate the video quality in line with the perception of the human visual system (HVS). …”
Get full text
Get full text

Designing a novel Aerolysin-based multiepitope vaccine against Aeromonas hydrophila isolated from Osphronemus goramy using reverse vaccinology: an in silico approach by Rozi, ., Tyasningsih, Wiwiek, Rahmahani, Jola, Aksono, Eduardus Bimo, Yunus, Muchammad, Al Arif, Mohammad Anam, Kuncorojati, Suryo, Kusdarwati, Rahayu, Sari, Putri Desi Wulan, Azmai, Mohammad Noor Amal, Salleh, Annas, Khanand, Nadeem, Suwarno, .

“…Based on docking simulations, the MEV had strong binding energies with TLR-4 (-1081.4 kcal/mol), TLR-9 (-723.2 kcal/mol), MHC-I (-866.2 kcal/ mol), and MHC-II (-9043.3 kcal/mol). Based on computational modeling, we expect the aerolysin MEV candidate to activate diverse immune mechanisms, stimulate robust responses against A. hydrophila, and maintain safety. …”
Get full text

Heads-Up Multitasker: Simulating Attention Switching On Optical Head-Mounted Displays by Bai, Yunpeng, Ikkala, Aleksi, Oulasvirta, Antti, Zhao, Shengdong, Wang, Lucia J, Yang, Pengzhi, Xu, Peisen

Get full text

A hybrid discrete differential evolution algorithm for economic lot scheduling problem with time variant lot sizing by Suganthan, P. N., Ganguly, Srinjoy, Chowdhury, Arkabandhu, Mukherjee, Swahum, Das, Swagatam, Chua, Tay Jin

Get full text
Get full text
Get full text

Listening by Synthesizing by Cherep, Manuel

“…In this thesis, I propose an alternate approach that relies on a virtual modular synthesizer; a computational model with modules for controlling, generating, and processing sound that connect together to produce diverse sounds. …”
Get full text
Get full text

The stress granule protein G3BP1 binds viral dsRNA and RIG-I to enhance interferon-β response by Kim, Susana Soo-Yeon, Sze, Lynette, Lam, Kong-Peng

“…Interestingly, immunoprecipitation studies using biotin-labeled viral dsRNA or poly(I·C) and cell lysate–derived or in vitro translated G3BP1 indicated that G3BP1 could directly bind these substrates and again via its RGG domain. Computational modeling further revealed a juxtaposed interaction between G3BP1 RGG and RIG-I RNA-binding domains. …”
Get full text
Get full text

Information learning bias in depression by Lin, W

“…We developed a task in which we independently manipulated the volatility of win and loss outcomes and systematically examined the underlying mechanisms of adaptive learning in depression using computational modelling, fMRI, pharmacological manipulation and pupillometry recordings. …”

Human-AI Co-Dancing: Evolving Cultural Heritage through Collaborative Choreography with Generative Virtual Characters by Pataranutaporn, Pat, Mano, Phoomparin, Bhongse-Tong, Piyaporn, Chongchadklang, Tas, Archiwaranguprok, Chayapatr, Hantrakul, Lamtharn, Eaimsa-ard, Jirach, Maes, Pattie, Klunchun, Pichet

Get full text

Physiologically based modelling of cerebral autoregulation by Wang, Y

“…This CA model was subsequently coupled with a multi- compartment porous Finite Element model, successfully incorporates autoregulation mechanisms into the computational modelling of brain oedema and osmotherapy. The improved model demonstrated closer alignment with clinical data, particularly enhancing consistency in managing intracranial pressure during the rebound phase following osmotherapy. …”

kboolnet: a toolkit for the verification, validation, and visualization of reaction-contingency (rxncon) models by Carretero Chavez, Willow, Krantz, Marcus, Klipp, Edda, Kufareva, Irina

“…Abstract Background Computational models of cell signaling networks are extremely useful tools for the exploration of underlying system behavior and prediction of response to various perturbations. …”
Get full text

Designing a spiking neural network system for object recognition by Thong, Jing Yuan

“…An innovative brain-inspired computational model, Spiking Neural Networks have demonstrated high energy efficiency and remarkable processing capabilities of spatiotemporal information. …”
Get full text

Cordic core based quantum readout processing block design on FPGA by Cao, Hongyu

“…As an emerging technology, quantum computing processes qubit information mainly utilizing two quantum principles, namely superposition and entanglement, showing unique computing advantages compared to traditional computing models. However, the practical application of quantum computing still faces challenges such as the stability of qubits, the complexity of error correction, and system scalability. …”
Get full text

ECG analysis of ventricular fibrillation dynamics reflects ischaemic progression subject to variability in patient anatomy and electrode location by Martinez-Navarro, H, Bertrand, A, Doste, R, Smith, H, Tomek, J, Ristagno, G, Oliveira, RS, Weber dos Santos, R, Pandit, SV, Rodriguez, B

“…For this, we developed a human-based computational modelling and simulation framework for the quantification of ECG metrics, namely, frequency, slope, and amplitude spectrum area (AMSA) during VF in acute ischaemia for several electrode configurations. …”

Biologically inspired visual intelligence for unmanned ground vehicles by Peyman Moghadam

“…Hence, in this work, a computational model for the vanishing point estimation based on the visual gaze behavior of drivers is developed for UGVs. …”
Get full text

Refining learning models in grammatical inference by Wang, Xiangrui

“…In other words, grammatical inference tries to identify the computational models that generate the sample strings. In recent decade, due to the explosion of information, efficient ways of searching and organizing are of great importance. …”
Get full text

Integrative multi-omics dissection of cancer cell states and susceptibility by Liu, Yunpeng(Biologist)Massachusetts Institute of Technology.

Get full text

The Relationship between Linguistic Representations in Biological and Artificial Neural Networks by Kauf, Carina

“…This thesis work makes progress on all three questions by combining evidence from neuroimaging, behavioral research, and computational modeling. First, I analyze whether LM representations of linguistic stimuli encode information about semantic plausibility. …”
Get full text