Gag and env conserved element CE DNA vaccines elicit broad cytotoxic T cell responses targeting subdominant epitopes of HIV and SIV Able to recognize virus-infected cells in macaqu... by Xintao Hu, Zhongyan Lu, Antonio Valentin, Margherita Rosati, Kate E. Broderick, Niranjan Y. Sardesai, Preston A. Marx, James I. Mullins, George N. Pavlakis, Barbara K. Felber

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CoSMoS: Conserved Sequence Motif Search in the proteome by Leichert Lars I, Jakob Ursula, Korde Neeraj, Liu Xiao I

“…</p> <p>Conclusion</p> <p>CoSMoS is a valuable tool to identify highly conserved sequence motifs, to find regions suitable for mutational studies in functional analyses and to predict important structural features in <it>E. coli </it>proteins.…”
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Conserved Sequences in the 5′ and 3′ Untranslated Regions of Jingmenvirus Group Representatives by Alexander G. Litov, Egor V. Okhezin, Ivan S. Kholodilov, Oxana A. Belova, Galina G. Karganova

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A mammalian methylation array for profiling methylation levels at conserved sequences by Adriana Arneson, Amin Haghani, Michael J. Thompson, Matteo Pellegrini, Soo Bin Kwon, Ha Vu, Emily Maciejewski, Mingjia Yao, Caesar Z. Li, Ake T. Lu, Marco Morselli, Liudmilla Rubbi, Bret Barnes, Kasper D. Hansen, Wanding Zhou, Charles E. Breeze, Jason Ernst, Steve Horvath

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Annotation of cis-regulatory elements by identification, subclassification, and functional assessment of multispecies conserved sequences. by Hughes, J, Cheng, J, Ventress, N, Prabhakar, S, Clark, K, Anguita, E, De Gobbi, M, de Jong, P, Rubin, E, Higgs, D

“…This approach distinguishes multispecies conserved sequences (MCS) in noncoding regions from more rapidly evolving neutral DNA. …”

Evolutionary dynamics of a conserved sequence motif in the ribosomal genes of the ciliate <it>Paramecium</it> by Lynch Michael, Catania Francesco

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Strengthening the Effectiveness of the Candidate Influenza Vaccine by Combining Conserved Sequences of Hemagglutinin and M2 protein by L. M. Tsybalova, L. A. Stepanova, R. Yu. Kotlyarov, E. A. Blokhina, M. A. Shuklina, E. S. Mardanova, A. V. Korotkov, M. V. Potapchuk, N. V. Ravin

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Prediction of gene regulatory enhancers across species reveals evolutionarily conserved sequence properties. by Ling Chen, Alexandra E Fish, John A Capra

“…Based on this conservation, we hypothesized that enhancers active in different mammals would exhibit conserved sequence patterns in spite of their different genomic locations. …”
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PDL1 Signals through Conserved Sequence Motifs to Overcome Interferon-Mediated Cytotoxicity by Maria Gato-Cañas, Miren Zuazo, Hugo Arasanz, Maria Ibañez-Vea, Laura Lorenzo, Gonzalo Fernandez-Hinojal, Ruth Vera, Cristian Smerdou, Eva Martisova, Imanol Arozarena, Claudia Wellbrock, Diana Llopiz, Marta Ruiz, Pablo Sarobe, Karine Breckpot, Grazyna Kochan, David Escors

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Conserved sequence motifs in the abiotic stress response protein late embryogenesis abundant 3. by Karamjeet K Singh, Steffen P Graether

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Computational Evaluation of Designed Phosphatase from Conserved Sequence Scratch for Diverse Substrate Specificity by Paulchamy Chellapandi, Jayachandrabal Balachandramohan

“…Materials and methods: A rational 3D structural model of enzyme construct was developed from conserved sequence scratch encompassing a vanadium-binding site and functional domain. …”
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JaPaFi: A Novel Program for the Identification of Highly Conserved DNA Sequences by Chris Upton, Peter Kruczkiewicz, Francesco Marass, Marina Barsky, Aliya Sadeque

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Conserved Sequence Analysis of Influenza A Virus HA Segment and Its Application in Rapid Typing by Qianyu Lin, Xiang Ji, Feng Wu, Lan Ma

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Genome-wide identification of coding and non-coding conserved sequence tags in human and mouse genomes by Maggi Giorgio P, Donvito Giacinto, Anselmo Anna, Mignone Flavio, Grillo Giorgio, Pesole Graziano

“…By detecting clusters of coding conserved sequences the system is also suitable to accurately identify potential gene loci.…”
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Cis-regulatory elements in conserved non-coding sequences of nuclear receptor genes indicate for crosstalk between endocrine systems by Cruz Maria Araceli Diaz, Lund Dan, Szekeres Ferenc, Karlsson Sandra, Faresjö Maria, Larsson Dennis

Subjects: “…conserved sequences…”
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Conserved sequences of BART and BHRF regions encoding viral microRNAs in Epstein-Barr virus-associated lymphoma by Keishin Sunagawa, Tsunekazu Hishima, Hitomi Fukumoto, Hideki Hasegawa, Harutaka Katano

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Ultra-conserved sequences in the genomes of highly diverse <i>Anopheles</i> mosquitoes, with implications for malaria vector control by Samantha M O’Loughlin, Annie J Forster, Silke Fuchs, Tania Dottorini, Tony Nolan, Andrea Crisanti, Austin Burt

“…Here, we search for conserved sequences of 18 bp and over in an alignment of 21 AnophelesAnophelesAnophelesAnophelesAnopheles…”
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A conserved sequence in the small intracellular loop of tetraspanins forms an M-shaped inter-helix turn by Nikolas Reppert, Thorsten Lang

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Linear array of conserved sequence motifs to discriminate protein subfamilies: study on pyridine nucleotide-disulfide reductases by De Las Rivas Javier, Chehín Rosana, Farías Ricardo N, Rapisarda Viviana A, Avila César L

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Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements by Mignone Flavio, Maglietta Rosalia, D'Addabbo Annarita, Horner David S, Creanza Teresa M, Ancona Nicola, Pesole Graziano

“…Many features have been proposed for automatically distinguishing coding and non coding conserved sequences, making so necessary a systematic statistical assessment of their differences. …”