ProtRank: bypassing the imputation of missing values in differential expression analysis of proteomic data by Matúš Medo, Daniel M. Aebersold, Michaela Medová

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Temporal progress of gene expression analysis with RNA-Seq data: A review on the relationship between computational methods by Juliana Costa-Silva, Douglas S. Domingues, David Menotti, Mariangela Hungria, Fabrício Martins Lopes

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Transcriptomics Analysis for the Detection of Novel Drought Tolerance Genes in Jojoba (Simmondsia Chinensis) by Othman Al-Dossary, Ardashir Kharabian, Ibrahim Al-Mssallem, Agnelo Furtado, Robert Henry

Subjects: “…differential expression analysis…”
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Impact of human gene annotations on RNA-seq differential expression analysis by Yu Hamaguchi, Chao Zeng, Michiaki Hamada

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UMI-count modeling and differential expression analysis for single-cell RNA sequencing by Wenan Chen, Yan Li, John Easton, David Finkelstein, Gang Wu, Xiang Chen

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Error estimates for the analysis of differential expression from RNA-seq count data by Conrad J. Burden, Sumaira E. Qureshi, Susan R. Wilson

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PathExNET: A tool for extracting pathway expression networks from gene expression statistics by George Minadakis, Alfonso Muñoz-Pomer Fuentes, George Tsouloupas, Irene Papatheodorou, George M. Spyrou

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Identification of Immune-Related Genes as Biomarkers for Uremia by Lyu D, He G, Zhou K, Xu J, Zeng H, Li T, Tang N

Subjects: “…differential expression analysis…”
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ECFS-DEA: an ensemble classifier-based feature selection for differential expression analysis on expression profiles by Xudong Zhao, Qing Jiao, Hangyu Li, Yiming Wu, Hanxu Wang, Shan Huang, Guohua Wang

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SOPHIE: Generative Neural Networks Separate Common and Specific Transcriptional Responses by Alexandra J. Lee, Dallas L. Mould, Jake Crawford, Dongbo Hu, Rani K. Powers, Georgia Doing, James C. Costello, Deborah A. Hogan, Casey S. Greene

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aFold – using polynomial uncertainty modelling for differential gene expression estimation from RNA sequencing data by Wentao Yang, Philip Rosenstiel, Hinrich Schulenburg

Subjects: “…Differential expression analysis…”
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Identification of Colon Cancer-Related RNAs Based on Heterogeneous Networks and Random Walk by Bolin Chen, Teng Wang, Jinlei Zhang, Shengli Zhang, Xuequn Shang

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JCD-DEA: a joint covariate detection tool for differential expression analysis on tumor expression profiles by Yi Li, Yanan Liu, Yiming Wu, Xudong Zhao

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Genome-wide identification of 2-oxoglutarate and Fe (II)-dependent dioxygenase family genes and their expression profiling under drought and salt stress in potato by Hanny Chauhan, Aiana, Kashmir Singh

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Impaired response of the bronchial epithelium to inflammation characterizes severe equine asthma by Laurence Tessier, Olivier Côté, Mary Ellen Clark, Laurent Viel, Andrés Diaz-Méndez, Simon Anders, Dorothee Bienzle

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Profiling of MicroRNAs in Midguts of Plutella xylostella Provides Novel Insights Into the Bacillus thuringiensis Resistance by Jie Yang, Jie Yang, Jie Yang, Xuejiao Xu, Xuejiao Xu, Xuejiao Xu, Sujie Lin, Sujie Lin, Sujie Lin, Shiyao Chen, Guifang Lin, Guifang Lin, Guifang Lin, Qisheng Song, Jianlin Bai, Jianlin Bai, Jianlin Bai, Minsheng You, Minsheng You, Minsheng You, Miao Xie, Miao Xie, Miao Xie, Miao Xie

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XBSeq2: a fast and accurate quantification of differential expression and differential polyadenylation by Yuanhang Liu, Ping Wu, Jingqi Zhou, Teresa L. Johnson-Pais, Zhao Lai, Wasim H. Chowdhury, Ronald Rodriguez, Yidong Chen

Subjects: “…Differential expression analysis…”
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Flimma: a federated and privacy-aware tool for differential gene expression analysis by Olga Zolotareva, Reza Nasirigerdeh, Julian Matschinske, Reihaneh Torkzadehmahani, Mohammad Bakhtiari, Tobias Frisch, Julian Späth, David B. Blumenthal, Amir Abbasinejad, Paolo Tieri, Georgios Kaissis, Daniel Rückert, Nina K. Wenke, Markus List, Jan Baumbach

Subjects: “…Differential expression analysis…”
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Differential Expression Analysis of Blood MicroRNA in Identifying Potential Genes Relevant to Alzheimer’s Disease Pathogenesis, Using an Integrated Bioinformatics and Machine Learn... by Mei Sze Tan, Phaik-Leng Cheah, Ai-Vyrn Chin, Lai-Meng Looi, Siow-Wee Chang

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Bioinformatic analysis reveals an exosomal miRNA-mRNA network in colorectal cancer by Jun Ma, Peilong Wang, Lei Huang, Jianxia Qiao, Jianhong Li

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