Advances of Epigenetic Biomarkers and Epigenome Editing for Early Diagnosis in Breast Cancer by Pourya Sarvari, Pouya Sarvari, Ivonne Ramírez-Díaz, Frouzandeh Mahjoubi, Karla Rubio

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Targeting oncogenic TERT promoter variants by allele-specific epigenome editing by Alexandra G. Kouroukli, Nivethika Rajaram, Pavel Bashtrykov, Helene Kretzmer, Reiner Siebert, Albert Jeltsch, Susanne Bens

Subjects: “…Allele-specific epigenome editing (ASEE)…”
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The Plant Genome special section: Epigenome and epitranscriptome in plant–environment interactions by Wai‐Shing Yung, Ting‐Fung Chan, Fanjiang Kong, Hon‐Ming Lam

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The Microbiome, Epigenome, and Diet in Adults with Obesity during Behavioral Weight Loss by Emily B. Hill, Iain R. Konigsberg, Diana Ir, Daniel N. Frank, Purevsuren Jambal, Elizabeth M. Litkowski, Ethan M. Lange, Leslie A. Lange, Danielle M. Ostendorf, Jared J. Scorsone, Liza Wayland, Kristen Bing, Paul S. MacLean, Edward L. Melanson, Daniel H. Bessesen, Victoria A. Catenacci, Maggie A. Stanislawski, Sarah J. Borengasser

“…Obesity has been linked to the gut microbiome, epigenome, and diet, yet these factors have not been studied together during obesity treatment. …”
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Ovarian cancer plasticity and epigenomics in the acquisition of a stem-like phenotype by Berry Nicholas B, Bapat Sharmila A

“…The involvement of both-microRNA (miRNA) mediated epigenetic regulation, as well as epigenetic-induced changes in miRNA expression further highlight an additional complexity in cancer stem cell epigenomics.</p> <p>Recent advances in array-based whole-genome/epigenome analyses will continue to further unravel the genomes and epigenomes of cancer and cancer stem cells. …”
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Integrative Genomic–Epigenomic Analysis of Clozapine-Treated Patients with Refractory Psychosis by Yerye Gibrán Mayén-Lobo, José Jaime Martínez-Magaña, Blanca Estela Pérez-Aldana, Alberto Ortega-Vázquez, Alma Delia Genis-Mendoza, David José Dávila-Ortiz de Montellano, Ernesto Soto-Reyes, Humberto Nicolini, Marisol López-López, Nancy Monroy-Jaramillo

“…To find predictors of CLZ-associated phenotypes (i.e., the metabolic ratio, dosage, and response), we explore the genomic and epigenomic characteristics of 44 patients with refractory psychosis who receive CLZ treatment based on the integration of polygenic risk score (PRS) analyses in simultaneous methylome profiles. …”
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genomeSidekick: A user-friendly epigenomics data analysis tool by Junjie Chen, Ashley J. Zhu, René R. S. Packard, René R. S. Packard, René R. S. Packard, René R. S. Packard, Thomas M. Vondriska, Thomas M. Vondriska, Thomas M. Vondriska, Douglas J. Chapski

Subjects: “…epigenomics…”
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Quantitative ChIP-Seq Normalization Reveals Global Modulation of the Epigenome by David A. Orlando, Mei Wei Chen, Victoria E. Brown, Snehakumari Solanki, Yoon J. Choi, Eric R. Olson, Christian C. Fritz, James E. Bradner, Matthew G. Guenther

“…Here, we describe a method called ChIP with reference exogenous genome (ChIP-Rx) that allows one to perform genome-wide quantitative comparisons of histone modification status across cell populations using defined quantities of a reference epigenome. ChIP-Rx enables the discovery and quantification of dynamic epigenomic profiles across mammalian cells that would otherwise remain hidden using traditional normalization methods. …”
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Common Altered Epigenomic Domains in Cancer Cells: Characterization and Subtle Variations by Ming-Ta Hsu, Chuan-Hsiung Chang, Tze-Tze Liu, Dow-Tien Chen, Chun-Hui Chiao, Ian Yi-Feng Chang, Yi-Chien Tsai, Kate Hua

“…Taken together these results suggest that the human genome is organized in epigenomic domains that contain various different types of genes and imply that there are cis- and trans-regulators that control these domain-wide epigenetic changes and hence gene expression in the human genome. …”
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Epigenomic mechanisms of early adversity and HPA dysfunction: Considerations for PTSD research by Patrick O McGowan

“…In so doing, I will describe work on the Glucocorticoid Receptor (GR) and other well-characterized genes within the stress response pathway and then turn to genomic studies to illustrate the use of increasingly powerful high-throughput approaches to the study of epigenomic mechanisms.…”
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Impact of the Exposome on the Epigenome in Inflammatory Bowel Disease Patients and Animal Models by Sophie Vieujean, Bénédicte Caron, Vincent Haghnejad, Jean-Yves Jouzeau, Patrick Netter, Anne-Charlotte Heba, Ndeye Coumba Ndiaye, David Moulin, Guillermo Barreto, Silvio Danese, Laurent Peyrin-Biroulet

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Acute PFOA exposure promotes epigenomic alterations in mouse kidney tissues by Faizan Rashid, Anujaianthi Ramakrishnan, Christopher Fields, Joseph Irudayaraj

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Proximal and distal effects of genetic susceptibility to multiple sclerosis on the T cell epigenome by Tina Roostaei, Hans-Ulrich Klein, Yiyi Ma, Daniel Felsky, Pia Kivisäkk, Sarah M. Connor, Alexandra Kroshilina, Christina Yung, Belinda J. Kaskow, Xiaorong Shao, Brooke Rhead, José M. Ordovás, Devin M. Absher, Donna K. Arnett, Jia Liu, Nikolaos Patsopoulos, Lisa F. Barcellos, Howard L. Weiner, Philip L. De Jager

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Chemical-induced epigenome resetting for regeneration program activation in human cells by Guan Wang, Yanglu Wang, Yulin Lyu, Huanjing He, Shijia Liuyang, Jinlin Wang, Shicheng Sun, Lin Cheng, Yao Fu, Jialiang Zhu, Xinxing Zhong, Zhihan Yang, Qijing Chen, Cheng Li, Jingyang Guan, Hongkui Deng

“…Altogether, chemical reprogramming resets the epigenome through reversal of the loss of natural regeneration, representing a distinct concept for cellular reprogramming and advancing the development of regenerative therapeutic strategies.…”
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Epigenome microarray platform for proteome-wide dissection of chromatin-signaling networks. by Dennis J Bua, Alex J Kuo, Peggie Cheung, Chih Long Liu, Valentina Migliori, Alexsandra Espejo, Fabio Casadio, Christian Bassi, Bruno Amati, Mark T Bedford, Ernesto Guccione, Or Gozani

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Integrated epigenomic analysis stratifies chromatin remodellers into distinct functional groups by Katherine A. Giles, Cathryn M. Gould, Qian Du, Ksenia Skvortsova, Jenny Z. Song, Madhavi P. Maddugoda, Joanna Achinger-Kawecka, Clare Stirzaker, Susan J. Clark, Phillippa C. Taberlay

“…However, the influence of chromatin remodelling on shaping the functional epigenome is not well understood. Moreover, chromatin remodellers have not been extensively explored as a collective group across two-dimensional and three-dimensional epigenomic layers. …”
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Epigenomic reprogramming of therapy-resistant circulating tumor cells in colon cancer by Aida Bao-Caamano, Aida Bao-Caamano, Aida Bao-Caamano, Nicolás Costa-Fraga, Nicolás Costa-Fraga, Nicolás Costa-Fraga, Laure Cayrefourcq, Laure Cayrefourcq, Aitor Rodriguez-Casanova, Aitor Rodriguez-Casanova, Aitor Rodriguez-Casanova, Aitor Rodriguez-Casanova, Laura Muinelo-Romay, Laura Muinelo-Romay, Laura Muinelo-Romay, Rafael López-López, Rafael López-López, Rafael López-López, Rafael López-López, Catherine Alix-Panabières, Catherine Alix-Panabières, Catherine Alix-Panabières, Angel Díaz-Lagares, Angel Díaz-Lagares, Angel Díaz-Lagares, Angel Díaz-Lagares

Subjects: “…Epigenomics…”
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Environmental Enrichment Induces Epigenomic and Genome Organization Changes Relevant for Cognition by Sergio Espeso-Gil, Sergio Espeso-Gil, Sergio Espeso-Gil, Aliaksei Z. Holik, Sarah Bonnin, Shalu Jhanwar, Shalu Jhanwar, Sandhya Chandrasekaran, Sandhya Chandrasekaran, Roger Pique-Regi, Júlia Albaigès-Ràfols, Júlia Albaigès-Ràfols, Michael Maher, Michael Maher, Michael Maher, Jon Permanyer, Manuel Irimia, Manuel Irimia, Manuel Irimia, Marc R. Friedländer, Meritxell Pons-Espinal, Meritxell Pons-Espinal, Schahram Akbarian, Mara Dierssen, Mara Dierssen, Philipp G. Maass, Philipp G. Maass, Charlotte N. Hor, Charlotte N. Hor, Stephan Ossowski, Stephan Ossowski

“…In early development, the environment triggers mnemonic epigenomic programs resulting in memory and learning experiences to confer cognitive phenotypes into adulthood. …”
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Early-Life Iron Deficiency Anemia Programs the Hippocampal Epigenomic Landscape by Amanda K. Barks, Shirelle X. Liu, Michael K. Georgieff, Timothy C. Hallstrom, Phu V. Tran

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Paternal Inheritance of Bisphenol A Cardiotoxic Effects: The Implications of Sperm Epigenome by Marta Lombó, María Paz Herráez

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