Approaches in Gene Coexpression Analysis in Eukaryotes by Vasileios L. Zogopoulos, Georgia Saxami, Apostolos Malatras, Konstantinos Papadopoulos, Ioanna Tsotra, Vassiliki A. Iconomidou, Ioannis Michalopoulos

“…In this review, we offer a comprehensive and comprehensible account of the steps required for performing a complete gene coexpression analysis in eukaryotic organisms. We comment on the use of RNA-Seq vs. microarrays, as well as the best practices for GCN construction. …”
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Microbial eukaryotes: Extending observations North by Jennifer F Biddle

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Structural Insights into Eukaryotic DNA Replication by Sylvie eDoublié, Karl E Zahn

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The autoregulation of a eukaryotic DNA transposon by Corentin Claeys Bouuaert, Karen Lipkow, Steven S Andrews, Danxu Liu, Ronald Chalmers

“…The behavior of distantly related eukaryotic transposons is consistent with the same mechanism, which may therefore be widely applicable.…”
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Evolving eukaryotes: an interview with Joel Dacks by Joel B. Dacks

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Evaluating eukaryotic secreted protein prediction by Ellis Lynda BM, Klee Eric W

“…</p> <p>Results</p> <p>Prediction accuracies were evaluated using 372 unbiased, eukaryotic, SwissProt protein sequences. TargetP, SignalP 3.0 maximum S-score and SignalP 3.0 D-score were the most accurate single scores (90–91% accurate). …”
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The Interplay of Host Autophagy and Eukaryotic Pathogens by Robert J. Evans, Varadharajan Sundaramurthy, Eva-Maria Frickel

“…The scenario is further compounded since many of the eukaryotic pathogens have their own sets of either complete or partial autophagy machinery. …”
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Bioenergetics and metabolism of eukaryotic cell proliferation by Li, Zhaoqi

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The archaeal origins of the eukaryotic translational system by Hartman, Hyman, Favaretto, Paola, Smith, Temple F.

“…Although this and other analyses strongly support an archaeal origin for a substantial fraction of the eukaryotic translational machinery, especially the ribosomal proteins, there have been numerous unique and ubiquitous additions to the eukaryotic translational system besides the 11 unique eukaryotic ribosomal proteins. …”
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NMR study of eukaryotic translation termination by Wong, Leo E

“…Unlike in bacteria, eukaryotic translation termination is more complex. …”
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Earth's earliest non-marine eukaryotes. by Strother, P, Battison, L, Brasier, M, Wellman, C

“…The apparent dominance of eukaryotes in non-marine settings by 1 Gyr ago indicates that eukaryotic evolution on land may have commenced far earlier than previously thought.…”

Systems biology of the eukaryotic cell cycle by Novak, B

Eukaryotic and prokaryotic stomatins: the proteolytic link. by Green, J, Fricke, B, Chetty, M, von Düring, M, Preston, G, Stewart, G

“…The corollary is that stomatin could be a partner protein for a membrane-bound proteolytic process, in both prokaryotes and in eukaryotes generally: this idea is consistent with experimental evidence.…”

Earth's earliest non-marine eukaryotes by Strother, P, Battison, L, Brasier, MD, Wellman, C

“…The apparent dominance of eukaryotes in non-marine settings by 1-Gyr ago indicates that eukaryotic evolution on land may have commenced far earlier than previously thought. © 2011 Macmillan Publishers Limited. …”

Eukaryotic expression: developments for structural proteomics. by Aricescu, A, Assenberg, R, Bill, R, Busso, D, Chang, V, Davis, S, Dubrovsky, A, Gustafsson, L, Hedfalk, K, Heinemann, U, Jones, I, Ksiazek, D, Lang, C, Maskos, K, Messerschmidt, A, Macieira, S, Peleg, Y, Perrakis, A, Poterszman, A, Schneider, G, Sixma, T, Sussman, J, Sutton, G, Tarboureich, N, Zeev-Ben-Mordehai, T

“…Strategies for co-expression, selenomethionine labelling (in all three eukaryotic systems) and control of glycosylation (for secreted proteins in mammalian cells) are assessed.…”

Biophysical properties of the eukaryotic ribosomal stalk. by Grela, P, Krokowski, D, Gordiyenko, Y, Krowarsch, D, Robinson, C, Otlewski, J, Grankowski, N, Tchórzewski, M

“…The most distinctive feature of this center is an oligomeric complex, the stalk, responsible for the recruitment of translation factors and stimulation of translation factor-dependent GTP hydrolysis. In eukaryotes, the stalk has been investigated in vitro and in vivo, but most information available concerns its individual components only. …”

Sequence analysis of eukaryotic mRNA. by Proudfoot, N, Cheng, C, Brownlee, G

Distinct gene number-genome size relationships for eukaryotes and non-eukaryotes: gene content estimation for dinoflagellate genomes. by Yubo Hou, Senjie Lin

“…Distinct relationships between log(10)-transformed protein-coding gene number (Y') versus log(10)-transformed genome size (X', genome size in kbp) were found for eukaryotes and non-eukaryotes. Eukaryotes best fit a logarithmic model, Y' = ln(-46.200+22.678X', whereas non-eukaryotes a linear model, Y' = 0.045+0.977X', both with high significance (p<0.001, R(2)>0.91). …”
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Evolutionary convergence on highly-conserved 3' intron structures in intron-poor eukaryotes and insights into the ancestral eukaryotic genome. by Manuel Irimia, Scott William Roy

“…The presence of spliceosomal introns in eukaryotes raises a range of questions about genomic evolution. …”
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Bacterial and eukaryotic porins : structure, function, mechanism / by Benz, Roland

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