Combining RNA-seq data and homology-based gene prediction for plants, animals and fungi by Jens Keilwagen, Frank Hartung, Michael Paulini, Sven O. Twardziok, Jan Grau

Subjects: “…Homology-based gene prediction…”
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FAM family gene prediction model reveals heterogeneity, stemness and immune microenvironment of UCEC by Hao Chi, Xinrui Gao, Zhijia Xia, Wanying Yu, Xisheng Yin, Yifan Pan, Gaoge Peng, Xinrui Mao, Alexander Tobias Teichmann, Jing Zhang, Lisa Jia Tran, Tianxiao Jiang, Yunfei Liu, Guanhu Yang, Qin Wang

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OrthoFiller: utilising data from multiple species to improve the completeness of genome annotations by Michael P. Dunne, Steven Kelly

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Correction: Exploring crop genomes: assembly features, gene prediction accuracy, and implications for proteomics studies by Qussai Abbas, Mathias Wilhelm, Bernhard Kuster, Brigitte Poppenberger, Dmitrij Frishman

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Physical mapping and candidate gene prediction of fertility restorer gene of cytoplasmic male sterility in cotton by Cunpeng Zhao, Guiyuan Zhao, Zhao Geng, Zhaoxiao Wang, Kaihui Wang, Suen Liu, Hanshuang Zhang, Baosheng Guo, Junyi Geng

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Functional polymorphisms in circadian positive feedback loop genes predict postsurgical prognosis of gastric cancer by Yibing Chen, Dandan Wang, Yucen Song, Xiaofei Zhang, Zhihui Jiao, Juqin Dong, Lin Lü, Zhengzhi Zou, Wei Du, Falin Qu

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NetGenes: A Database of Essential Genes Predicted Using Features From Interaction Networks by Vimaladhasan Senthamizhan, Vimaladhasan Senthamizhan, Balaraman Ravindran, Balaraman Ravindran, Balaraman Ravindran, Karthik Raman, Karthik Raman, Karthik Raman

“…Essential gene prediction models built so far are heavily reliant on sequence-based features, and the scope of network-based features has been narrow. …”
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Glycometabolism and lipid metabolism related genes predict the prognosis of endometrial carcinoma and their effects on tumor cells by Xuefen Lin, Jianfeng Zheng, Xintong Cai, Li Liu, Shan Jiang, Qinying Liu, Yang Sun

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Polymorphisms of CARD9 Gene Predict Disease Progression and Renal Survival of Immunoglobulin A Nephropathy by Chunhong He, Dianchun Shi, Lin Guo, Zhong Zhong, Xue-Qing Yu, Ming Li

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A signature inferred from Drosophila mitotic genes predicts survival of breast cancer patients. by Christian Damasco, Antonio Lembo, Maria Patrizia Somma, Maurizio Gatti, Ferdinando Di Cunto, Paolo Provero

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miTarget: microRNA target gene prediction using a support vector machine by Rhee Je-Keun, Nam Jin-Wu, Kim Sung-Kyu, Lee Wha-Jin, Zhang Byoung-Tak

“…Although several computational miRNA target-gene prediction methods have been proposed, they still have limitations in revealing actual target genes.…”
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Risk alleles of USF1 gene predict cardiovascular disease of women in two prospective studies. by Kati Komulainen, Mervi Alanne, Kirsi Auro, Riika Kilpikari, Päivi Pajukanta, Janna Saarela, Pekka Ellonen, Kaisa Salminen, Sangita Kulathinal, Kari Kuulasmaa, Kaisa Silander, Veikko Salomaa, Markus Perola, Leena Peltonen

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Construction of an RNA modification-related gene predictive model associated with prognosis and immunity in gastric cancer by Airexiati Tuhongjiang, Feng Wang, Chengrong Zhang, Sisi Pang, Yujiang Qu, Bo Feng, Gulimire Amuti

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Genetic variants in p53 signaling pathway genes predict chemotherapy efficacy in colorectal cancer by Ke Zhang, Yixuan Meng, Xiangming Cao, Ye Xu, Mulong Du, Yuan Wu, Lingxiang Liu

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Overexpressing PTTG family genes predict poor prognosis in kidney renal clear cell carcinoma by Yonghui Gui, Xueni Liu, Chao Wang, Peng Yang

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Downregulation of circulating miR-320a and target gene prediction in patients with diabetic retinopathy by Marcelle SanJuan Ganem Prado, Mirthz Lemos de Jesus, Thaline Cunha de Goes, Lucilla Silva Oliveira Mendonça, Carla Martins Kaneto

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A Novel TAF-Related Signature Based on ECM Remodeling Genes Predicts Glioma Prognosis by Lin-jian Wang, Lin-jian Wang, Peipei Lv, Yongli Lou

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Prognostic model based on telomere-related genes predicts the risk of oral squamous cell carcinoma by Kun Yue, Xue Yao

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A model of twenty-three metabolic-related genes predicting overall survival for lung adenocarcinoma by Zhenyu Zhao, Boxue He, Qidong Cai, Pengfei Zhang, Xiong Peng, Yuqian Zhang, Hui Xie, Xiang Wang

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Lymphatic and angiogenic candidate genes predict the development of secondary lymphedema following breast cancer surgery. by Christine Miaskowski, Marylin Dodd, Steven M Paul, Claudia West, Deborah Hamolsky, Gary Abrams, Bruce A Cooper, Charles Elboim, John Neuhaus, Brian L Schmidt, Betty Smoot, Bradley E Aouizerat

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