Methods for computational gene prediction / by 240924 Majoros, William H.

Gene prediction with conditional random fields by Doherty, Matthew K

Get full text

Integrating alternative splicing detection into gene prediction by Schiex Thomas, Foissac Sylvain

“…Despite considerable progresses in term of accuracy in computational gene prediction, the ability to reliably predict AS variants when there is local experimental evidence of it remains an open challenge for gene finders.…”
Get full text

Learning graph representations for disease gene prediction by Ata, Kircali Sezin

“…Finally, the literature evidence from PubMed database reveals the effectiveness of our proposed N2VKO framework for disease gene prediction. 3. The third proposed framework in this thesis addresses the candidate disease gene prediction problem. …”
Get full text

Three Genes Predict Prognosis in Microenvironment of Ovarian Cancer by Ya Guo, Ya Li Wang, Wang Hui Su, Peng Tao Yang, Jing Chen, Heng Luo

Get full text

Pathogenic Gene Prediction Algorithm Based on Heterogeneous Information Fusion by Chunyu Wang, Jie Zhang, Xueping Wang, Ke Han, Maozu Guo, Maozu Guo

Subjects: “…pathogenic gene prediction…”
Get full text

Cell senescence-associated genes predict the malignant characteristics of glioblastoma by Chenyang Tan, Yan Wei, Xuan Ding, Chao Han, Zhongzheng Sun, Chengwei Wang

Get full text

Cellular senescence-related genes: predicting prognosis in hepatocellular carcinoma by Weiwei Yuan, Yuanmin Xu, Zhiheng Wu, Yang Huang, Lei Meng, Shiping Dai, Songcheng Ying, Zhangming Chen, Aman Xu

Get full text

Gene prediction of aging-related diseases based on DNN and Mashup by Junhua Ye, Shunfang Wang, Xin Yang, Xianjun Tang

Subjects: “…Gene prediction…”
Get full text

Dinucleotide controlled null models for comparative RNA gene prediction by Gesell Tanja, Washietl Stefan

“…[BMC Bioinformatics. 8:33] that RNA gene prediction programs can be biased by the genomic dinucleotide content, in particular those programs using a thermodynamic folding model including stacking energies. …”
Get full text

Copper-related genes predict prognosis and characteristics of breast cancer by Yi Liu, Jiandong Wang, Mengxi Jiang, Mengxi Jiang

Get full text

Disease-gene prediction based on preserving structure network embedding by Jinlong Ma, Tian Qin, Ju Xiang, Ju Xiang

Subjects: “…disease-gene prediction…”
Get full text

Using ESTs to improve the accuracy of <it>de novo </it>gene prediction by Brent Michael R, Wei Chaochun

“…<it>De novo </it>gene prediction systems, which ignore ESTs in favor of genomic sequence, can predict such "untouched" exons, but they are less accurate when predicting exons to which ESTs align. …”
Get full text

Ensemble disease gene prediction by clinical sample-based networks by Ping Luo, Li-Ping Tian, Bolin Chen, Qianghua Xiao, Fang-Xiang Wu

Subjects: “…Disease gene prediction…”
Get full text

Computational analysis and experimental validation of gene predictions in Toxoplasma gondii. by Joseph M Dybas, Carlos J Madrid-Aliste, Fa-Yun Che, Edward Nieves, Dmitry Rykunov, Ruth Hogue Angeletti, Louis M Weiss, Kami Kim, Andras Fiser

“…Mass spectrometry analysis validated 2,477 gene coding regions with 6,438 possible alternative gene predictions; approximately one third of the T. gondii proteome. …”
Get full text

Lung adenocarcinoma-related target gene prediction and drug repositioning by Rui Xuan Huang, Damrongrat Siriwanna, William C. Cho, Tsz Kin Wan, Yan Rong Du, Adam N. Bennett, Qian Echo He, Jun Dong Liu, Xiao Tai Huang, Kei Hang Katie Chan, Kei Hang Katie Chan, Kei Hang Katie Chan

Subjects: Get full text

Cellular Senescence-Related Genes: Predicting Prognosis in Gastric Cancer by Longfei Dai, Xu Wang, Tao Bai, Jianjun Liu, Bo Chen, Wenqi Yang

Get full text

Neutrophil extracellular trap genes predict immunotherapy response in gastric cancer by Ningjie Sun, Junjie Jiang, Biying Chen, Yiran Chen, Haiming Wu, Haiyong Wang, Jianfeng Chen

Get full text

Updated Gene Prediction of the Cucumber (9930) Genome through Manual Annotation by Weixuan Du, Lei Xia, Rui Li, Xiaokun Zhao, Danna Jin, Xiaoning Wang, Yun Pei, Rong Zhou, Jinfeng Chen, Xiaqing Yu

“…Additionally, tissue-specific patterns of gene expression were examined using the newly obtained transcriptome data with the revised gene prediction model. This improved annotation of the cucumber genome will provide essential and accurate resources for studies in cucumber.…”
Get full text

Long-read transcriptome data for improved gene prediction in Lentinula edodes by Sin-Gi Park, Seung il Yoo, Dong Sung Ryu, Hyunsung Lee, Yong Ju Ahn, Hojin Ryu, Junsu Ko, Chang Pyo Hong

“…Keywords: Gene model, Gene prediction, Lentinula edodes, PacBio Single-molecule real-time (SMRT) transcriptome sequencing…”
Get full text