The Gene Set Builder: collation, curation, and distribution of sets of genes by Wasserman Wyeth W, Lim Jonathan S, Yusuf Dimas

“…<p>Abstract</p> <p>Background</p> <p>In bioinformatics and genomics, there are many applications designed to investigate the common properties for a set of genes. Often, these multi-gene analysis tools attempt to reveal sequential, functional, and expressional ties. …”
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Ensemble learning for detecting gene-gene interactions in colorectal cancer by Faramarz Dorani, Ting Hu, Michael O. Woods, Guangju Zhai

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Prioritization of Susceptibility Genes for Ectopic Pregnancy by Gene Network Analysis by Ji-Long Liu, Miao Zhao

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Gene essentiality, conservation index and co-evolution of genes in cyanobacteria. by Gopi Siva Sai Tiruveedula, Pramod P Wangikar

“…On the contrary, the conserved but non-essential genes broadly comprise of genes required under stress conditions. …”
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Shaping the Landscape of Eukaryotic Gene Expression: Horizontal Gene Transfer by Ruby Dhar, Arun Kumar, Subhradip Karmakar

Subjects: “…eukaryotic gene expression…”
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The structure balance of gene-gene networks beyond pairwise interactions. by Nastaran Allahyari, Amir Kargaran, Ali Hosseiny, G R Jafari

“…Despite its high and direct impact on nearly all biological processes, the underlying structure of gene-gene interaction networks is investigated so far according to pair connections. …”
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Inference of gene networks using gene expression data with applications by Chi-Kan Chen

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Controlling gene expression timing through gene regulatory architecture. by Md Zulfikar Ali, Robert C Brewster

“…Gene networks typically involve the regulatory control of multiple genes with related function. …”
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geneRFinder: gene finding in distinct metagenomic data complexities by Raíssa Silva, Kleber Padovani, Fabiana Góes, Ronnie Alves

Subjects: “…Gene prediction…”
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GeneLibrarian: an effective gene-information summarization and visualization system by Liu Heng-Hui, Shin Jyh-Wei, Chiang Jung-Hsien, Chin Chong-Liang

“…<p>Abstract</p> <p>Background</p> <p>Abundant information about gene products is stored in online searchable databases such as annotation or literature. …”
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Gene expression analysis reveals diabetes-related gene signatures by M. I. Farrim, A. Gomes, D. Milenkovic, R. Menezes

“…Methods A comprehensive literature search for human studies on gene expression alterations in the pancreas associated with T1D and T2D was performed. …”
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Gene duplication and the evolution of ribosomal protein gene regulation in yeast by Regev, Aviv, Wapinski, Ilan, Pfiffner, Jenna, French, Courtney, Socha, Amanda, Thompson, Dawn Anne

“…Coexpression of genes within a functional module can be conserved at great evolutionary distances, whereas the associated regulatory mechanisms can substantially diverge. …”
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Global gene disruption in human cells to assign genes to phenotypes by Ploegh, Hidde, Yuan, Bingbing B., Carette, Jan E., Guimaraes, Carla P., Wuethrich, Irene, Blomen, Vincent A., Varadarajan, Malini, Sun, Chong, Bell, George W., Muellner, Markus K., Nijman, Sebastian M., Brummelkamp, Thijn R.

“…Insertional mutagenesis in a haploid background can disrupt gene function[superscript 1]. We extend our earlier work by using a retroviral gene-trap vector to generate insertions in >98% of the genes expressed in a human cancer cell line that is haploid for all but one of its chromosomes. …”
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Gene ontology enrichment improves performances of functional similarity of genes by Liu, Wenting, Liu, Jianjun, Rajapakse, Jagath Chandana

Subjects: “…Gene Ontology…”
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Genomic studies of gene expression: regulation of the Wilson disease gene. by Bochukova, E, Jefferson, A, Francis, M, Monaco, A

“…Comparison with conventional methods confirms the reliability of the genomic approach for thorough examination of gene expression. This experimental system illustrates the potential of BAC clones in genomic gene expression studies, new gene therapy strategies, and validation of potential molecular targets for drug discovery.…”

Gene x gene interactions in genome wide association studies by Bhattacharya, K

“…Consequently, it has been suggested that gene-gene interactions might contribute to the missing heritability of complex diseases.…”

The population and functional genomics of the Neisseria revealed with gene-by-gene approaches by Maiden, M, Harrison, O

“…Here investigations of the genus Neisseria illustrate the gene-by-gene conceptual approach to the organisation and analysis of WGS data. …”

Effective gene selection techniques for classification of gene expression data by Yeo, Lee Chin

“…When classifying tissue samples, gene selection plays an important role. In this research, some existing gene selection techniques are studied and better gene selection techniques are proposed and developed. …”
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A model for gene selection and classification of gene expression data by Mohamad, Mohd Saberi, Omatu, Sigeru, Deris, Safaai, Mohd Hashim, Siti Zaiton

“…One problem arising from these data is how to select a small subset of genes from thousands of genes and a few samples that are inherently noisy. …”
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Acknowledgment to the Reviewers of <i>Genes</i> in 2022 by Genes Office Editorial

“…Genes…”
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