Divergence of gene body DNA methylation and evolution of plant duplicate genes. by Jun Wang, Nicholas C Marowsky, Chuanzhu Fan

“…It has been shown that gene body DNA methylation is associated with gene expression. …”
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Construction of an Insertion Vector for Gene Targeting of Chicken Lens-specific Gene by Yuji Fukushima, Masaharu Sato, Haruo Matsuda, Shuichi Furusawa, Hiroyuki Horiuchi

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The IRX3 Gene; the Missing Link between the FTO Gene and Obesity by Saeid Doaei, Maryam Gholamalizadeh, Alireza Mousavi Jarrahi, Marjan Badakhanian, Rahim Najafi

Subjects: “…irx3 gene, the fto gene, obesity…”
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Accurate and unambiguous tag-to-gene mapping in serial analysis of gene expression by Melo Francisco, Agosin Eduardo, Varela Cristian, Malig Rodrigo

“…<p>Abstract</p> <p>Background</p> <p>In this study, we present a robust and reliable computational method for tag-to-gene assignment in serial analysis of gene expression (SAGE). …”
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Characterization of Genes for Beef Marbling Based on Applying Gene Coexpression Network by Dajeong Lim, Nam-Kuk Kim, Seung-Hwan Lee, Hye-Sun Park, Yong-Min Cho, Han-Ha Chai, Heebal Kim

“…In particular, marbling is a complex trait and needs a system-level approach for identifying candidate genes related to the trait. To find the candidate gene associated with marbling, we used a weighted gene coexpression network analysis from the expression value of bovine genes. …”
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Reliable reference genes and abiotic stress marker genes in Klebsormidium nitens by Pauline Chatelain, Cécile Blanchard, Jeremy Astier, Agnès Klinguer, David Wendehenne, Sylvain Jeandroz, Claire Rosnoblet

“…Based on these reference genes, we were able to identify marker genes in response to the three abiotic stresses in K. nitens.…”
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EndoGeneAnalyzer: A tool for selection and validation of reference genes. by Eliel Barbosa Teixeira, André Salim Khayat, Paulo Pimentel Assumpção, Samir Mansour Casseb, Caroline Aquino Moreira-Nunes, Fabiano Cordeiro Moreira

“…The selection of proper reference genes is critical for accurate gene expression analysis in all fields of biological and medical research, mainly because there are many distinctions between different tissues and specimens. …”
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Gene of the issue: GP1BA gene mutations associated with bleeding by Maha Othman, Jonas Emsley

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Identification of pathogenic genes of pterygium based on the Gene Expression Omnibus database by Xiao-Li Yue, Zi-Qing Gao

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Indeterminacy of reverse engineering of Gene Regulatory Networks: the curse of gene elasticity. by Arun Krishnan, Alessandro Giuliani, Masaru Tomita

“…Gene Regulatory Networks (GRNs) have become a major focus of interest in recent years. …”
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Evolution by Pervasive Gene Fusion in Antibiotic Resistance and Antibiotic Synthesizing Genes by Orla Coleman, Ruth Hogan, Nicole McGoldrick, Niamh Rudden, James O. McInerney

“…Phylogenetic (tree-based) approaches to understanding evolutionary history are unable to incorporate convergent evolutionary events where two genes merge into one. In this study, as exemplars of what can be achieved when a tree is not assumed a priori, we have analysed the evolutionary histories of polyketide synthase genes and antibiotic resistance genes and have shown that their history is replete with convergent events as well as divergent events. …”
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Discovery of paradoxical genes: reevaluating the prognostic impact of overexpressed genes in cancer by Dequan Liu, Lei Liu, Xiangyu Che, Guangzhen Wu

Subjects: “…paradoxical genes…”
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The evolution of bitter taste receptor gene in primates: Gene duplication and selection by Ping Feng, Xinyue Liang, Hongling Yu, Xiaoyan Dong, Qiufang Liang, Chuanyin Dai

Subjects: “…bitter taste receptor gene…”
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Approaching ‘phantom heritability’ in psychiatry by hypothesis-driven gene-gene interactions by Diego Luiz Rovaris, Nina Roth Mota, Sidia Maria Callegari-Jacques, Claiton Henrique Dotto Bau

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Gene expression profiling: can we identify the right target genes? by J. E. Loyd

“…Gene expression profiling allows the simultaneous monitoring of the transcriptional behaviour of thousands of genes, which may potentially be involved in disease development. …”
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Correction: Discovering Implicit Entity Relation with the Gene-Citation-Gene Network

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The <it>SLEEPER</it> genes: a transposase-derived angiosperm-specific gene family by Knip Marijn, de Pater Sylvia, Hooykaas Paul JJ

“…We studied the presence of <it>DAYSLEEPER</it> orthologs in plants and propose a model for the domestication of the ancestral <it>DAYSLEEPER</it> gene in angiosperms.</p> <p>Results</p> <p>Using specific BLAST searches in genomic and EST libraries, we found that <it>DAYSLEEPER</it>-like genes (hereafter called <it>SLEEPER</it> genes) are unique to angiosperms. …”
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Using GeneReg to construct time delay gene regulatory networks by Qian Ziliang, Liu Lei, Huang Tao, Tu Kang, Li Yixue, Xie Lu

“…Because gene expression profiling has been widely used in basic biological research, especially in transcription regulation studies, we have developed GeneReg, an easy-to-use R package, to construct gene regulatory networks from time course gene expression profiling data; More importantly, this package can provide information about time delays between expression change in a regulator and that of its target genes.…”
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Use of Information Measures and Their Approximations to Detect Predictive Gene-Gene Interaction by Jan Mielniczuk, Marcin Rdzanowski

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The regenerating gene (Reg) family genes in inflammatory bowel disease (IBD) by Shin Takasawa, Tomoko Uchiyama, Maiko Takeda

Subjects: “…reg family genes…”
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