Can Introns Stabilize Gene Duplication? by Gioacchino Micheli, Giorgio Camilloni

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Evolvability, epigenetics and transposable elements by Fablet Marie, Vieira Cristina

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A species-specific nucleosomal signature defines a periodic distribution of amino acids in proteins by Luis Quintales, Ignacio Soriano, Enrique Vázquez, Mónica Segurado, Francisco Antequera

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Rapid Genome Evolution and Adaptation of Thlaspi arvense Mediated by Recurrent RNA-Based and Tandem Gene Duplications by Yanting Hu, Yanting Hu, Xiaopei Wu, Xiaopei Wu, Guihua Jin, Guihua Jin, Junchu Peng, Junchu Peng, Rong Leng, Rong Leng, Ling Li, Ling Li, Daping Gui, Chuanzhu Fan, Chengjun Zhang, Chengjun Zhang

“…However, how the retrotransposons affect the T. arvense genome evolution and adaptation is largely unknown. We report a high-quality chromosome-scale genome assembly of T. arvense with a scaffold N50 of 59.10 Mb. …”
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Materials genome evolution of surface plasmon resonance characteristics of Au nanoparticles decorated ZnO nanorods by Sheng-Che Yen, Yu-Lin Chen, Yen-Hsun Su

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Genome evolution and divergence in cis-regulatory architecture is associated with condition-responsive development in horned dung beetles. by Phillip L Davidson, Armin P Moczek

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Comparative analyses of plastid genomes from fourteen Cornales species: inferences for phylogenetic relationships and genome evolution by Chao-Nan Fu, Hong-Tao Li, Richard Milne, Ting Zhang, Peng-Fei Ma, Jing Yang, De-Zhu Li, Lian-Ming Gao

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Chromosome-level genome assembly of grass carp (Ctenopharyngodon idella) provides insights into its genome evolution by Chang-Song Wu, Zi-You Ma, Guo-Dong Zheng, Shu-Ming Zou, Xu-Jie Zhang, Yong-An Zhang

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The core genome evolution of Lactobacillus crispatus as a driving force for niche competition in the human vaginal tract by Chiara Tarracchini, Chiara Argentini, Giulia Alessandri, Gabriele Andrea Lugli, Leonardo Mancabelli, Federico Fontana, Rosaria Anzalone, Alice Viappiani, Francesca Turroni, Marco Ventura, Christian Milani

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Seventeen new complete mtDNA sequences reveal extensive mitochondrial genome evolution within the Demospongiae. by Xiujuan Wang, Dennis V Lavrov

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Genome Evolution of Filamentous Cyanobacterium <i>Nostoc</i> Species: From Facultative Symbiosis to Free Living by Da Huo, Hua Li, Fangfang Cai, Xiaoyu Guo, Zhiyi Qiao, Weibo Wang, Gongliang Yu, Renhui Li

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Chromosome-Scale Genome Assembly for Chinese Sour Jujube and Insights Into Its Genome Evolution and Domestication Signature by Lian-Ying Shen, Hang Luo, Xiao-Ling Wang, Xue-Meng Wang, Xiao-Jing Qiu, Hui Liu, Shan-Shan Zhou, Kai-Hua Jia, Shuai Nie, Yu-Tao Bao, Ren-Gang Zhang, Quan-Zheng Yun, Ying-Hui Chai, Jin-Ying Lu, Yu Li, Shu-Wei Zhao, Jian-Feng Mao, Shan-Gang Jia, Yong-Min Mao

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The Pontastacus leptodactylus (Astacidae) Repeatome Provides Insight Into Genome Evolution and Reveals Remarkable Diversity of Satellite DNA by Ljudevit Luka Boštjančić, Lena Bonassin, Lucija Anušić, Leona Lovrenčić, Višnja Besendorfer, Ivana Maguire, Frederic Grandjean, Christopher M. Austin, Carola Greve, Alexander Ben Hamadou, Jelena Mlinarec

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ATM germline variants in a young adult with chronic lymphocytic leukemia: 8 years of genomic evolution by Romina Royo, Laura Magnano, Julio Delgado, Sara Ruiz-Gil, Josep Ll. Gelpí, Holger Heyn, Malcom A. Taylor, Tatjana Stankovic, Xose S. Puente, Ferran Nadeu, Elías Campo

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Chromosome-level genome assembly of bunching onion illuminates genome evolution and flavor formation in Allium crops by Nanqiao Liao, Zhongyuan Hu, Jinshan Miao, Xiaodi Hu, Xiaolong Lyu, Haitian Fang, Yi-Mei Zhou, Ahmed Mahmoud, Guancong Deng, Yi-Qing Meng, Kejia Zhang, Yu-Yuan Ma, Yuelin Xia, Meng Zhao, Haiyang Yang, Yong Zhao, Ling Kang, Yiming Wang, Jing-Hua Yang, Yan-Hong Zhou, Ming-Fang Zhang, Jing-Quan Yu

“…Genome evolution of Allium genus and genomic basis underlying the pungency flavor formation remain poorly understood. …”
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The first two mitochondrial genomes for the genus Ramaria reveal mitochondrial genome evolution of Ramaria and phylogeny of Basidiomycota by Qiang Li, Lijiao Li, Ting Zhang, Peng Xiang, Qian Wu, Wenying Tu, Zhijie Bao, Liang Zou, Cheng Chen

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Comparison of the Chinese bamboo partridge and red Junglefowl genome sequences highlights the importance of demography in genome evolution by G. P. Tiley, R. T. Kimball, E. L. Braun, J. G. Burleigh

“…Abstract Background Recent large-scale whole genome sequencing efforts in birds have elucidated broad patterns of avian phylogeny and genome evolution. However, despite the great interest in economically important phasianids like Gallus gallus (Red Junglefowl, the progenitor of the chicken), we know little about the genomes of closely related species. …”
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Complete mitogenome assembly of Selenicereus monacanthus revealed its molecular features, genome evolution, and phylogenetic implications by Guilong Lu, Wenhua Wang, Juan Mao, Qing Li, Youxiong Que

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A chromosome-level genome reveals genome evolution and molecular basis of anthraquinone biosynthesis in Rheum palmatum by Tianyi Zhang, Lipan Zhou, Yang Pu, Yadi Tang, Jie Liu, Li Yang, Tao Zhou, Li Feng, Xumei Wang

“…Results We assembled the genome of Rheum palmatum L., one of the source plants of rhubarb, to elucidate its genome evolution and unpack the biosynthetic pathways of its bioactive compounds using a combination of PacBio HiFi, Oxford Nanopore, Illumina, and Hi-C scaffolding approaches. …”
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Pangenome Analysis of Burkholderia pseudomallei: Genome Evolution Preserves Gene Order despite High Recombination Rates. by Senanu M Spring-Pearson, Joshua K Stone, Adina Doyle, Christopher J Allender, Richard T Okinaka, Mark Mayo, Stacey M Broomall, Jessica M Hill, Mark A Karavis, Kyle S Hubbard, Joseph M Insalaco, Lauren A McNew, C Nicole Rosenzweig, Henry S Gibbons, Bart J Currie, David M Wagner, Paul Keim, Apichai Tuanyok

“…The frequency distribution of genes present in between 1 and 37 of the genomes analyzed matches well with a model of genome evolution in which 96% of the genome has very low recombination rates but 4% of the genome recombines readily. …”
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