Conserved Patterns of Symmetric Inversion in the Genome Evolution of <italic toggle="yes">Bordetella</italic> Respiratory Pathogens by Michael R. Weigand, Yanhui Peng, Dhwani Batra, Mark Burroughs, Jamie K. Davis, Kristen Knipe, Vladimir N. Loparev, Taccara Johnson, Phalasy Juieng, Lori A. Rowe, Mili Sheth, Kevin Tang, Yvette Unoarumhi, Margaret M. Williams, M. Lucia Tondella

“…The genus Bordetella includes additional pathogenic species infecting various animals, some even causing pertussis-like respiratory disease in humans; however, investigation of their genome evolution has been limited. We studied chromosome structure in complete genome sequences from 167 Bordetella species isolates, as well as 469 B. pertussis isolates, to gain a generalized understanding of rearrangement patterns among these related pathogens. …”
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Comparative Genomics, Evolution, and Drought-Induced Expression of Dehydrin Genes in Model <i>Brachypodium</i> Grasses by Maria Angeles Decena, Sergio Gálvez-Rojas, Federico Agostini, Ruben Sancho, Bruno Contreras-Moreira, David L. Des Marais, Pilar Hernandez, Pilar Catalán

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Comparative chloroplast genomics of 24 species shed light on the genome evolution and phylogeny of subtribe Coelogyninae (Orchidaceae) by Lin Li, Qiuping Wu, Junwen Zhai, Kunlin Wu, Lin Fang, Mingzhi Li, Songjun Zeng, Shijin Li

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Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors by Sean P. Gordon, Bruno Contreras-Moreira, Joshua J. Levy, Armin Djamei, Angelika Czedik-Eysenberg, Virginia S. Tartaglio, Adam Session, Joel Martin, Amy Cartwright, Andrew Katz, Vasanth R. Singan, Eugene Goltsman, Kerrie Barry, Vinh Ha Dinh-Thi, Boulos Chalhoub, Antonio Diaz-Perez, Ruben Sancho, Joanna Lusinska, Elzbieta Wolny, Candida Nibau, John H. Doonan, Luis A. J. Mur, Chris Plott, Jerry Jenkins, Samuel P. Hazen, Scott J. Lee, Shengqiang Shu, David Goodstein, Daniel Rokhsar, Jeremy Schmutz, Robert Hasterok, Pilar Catalan, John P. Vogel

“…Here, the authors use pan-genomic approach to reveal gradual polyploid genome evolution by analyzing of Brachypodium hybridum and its diploid progenitors.…”
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Circulating tumor DNA analysis depicts subclonal architecture and genomic evolution of small cell lung cancer by Jingying Nong, Yuhua Gong, Yanfang Guan, Xin Yi, Yuting Yi, Lianpeng Chang, Ling Yang, Jialin Lv, Zhirong Guo, Hongyan Jia, Yuxing Chu, Tao Liu, Ming Chen, Lauren Byers, Emily Roarty, Vincent K. Lam, Vassiliki A. Papadimitrakopoulou, Ignacio Wistuba, John V. Heymach, Bonnie Glisson, Zhongxing Liao, J. Jack Lee, P. Andrew Futreal, Shucai Zhang, Xuefeng Xia, Jianjun Zhang, Jinghui Wang

“…Here, the authors utilize circulating tumor DNA to investigate the genomic evolution and subclonal architecture of SCLC during therapy.…”
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Experimental relocation of the mitochondrial ATP9 gene to the nucleus reveals forces underlying mitochondrial genome evolution. by Maïlis Bietenhader, Alexandre Martos, Emmanuel Tetaud, Raeka S Aiyar, Carole H Sellem, Roza Kucharczyk, Sandra Clauder-Münster, Marie-France Giraud, François Godard, Bénédicte Salin, Isabelle Sagot, Julien Gagneur, Michelle Déquard-Chablat, Véronique Contamine, Sylvie Hermann-Le Denmat, Annie Sainsard-Chanet, Lars M Steinmetz, Jean-Paul di Rago

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Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution by Koonin Eugene V, Raoult Didier, Wolf Yuri I, Yutin Natalya

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Mitochondrial genome evolution in species belonging to the <it>Phialocephala fortinii</it> s.l. - <it>Acephala applanata species</it> complex by Duò Angelo, Bruggmann Rémy, Zoller Stefan, Bernt Matthias, Grünig Christoph R

“…The gene order was compared to deduce the mt genome evolution in the Pezizomycotina. Genetic variation in coding and intergenic regions of the mtDNA was studied for PAC to assess the usefulness of mt DNA for species diagnosis.…”
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Acquisition and loss of virulence-associated factors during genome evolution and speciation in three clades of Bordetella species by Linz, Bodo, Ivanov, Yury V., Preston, Andrew, Brinkac, Lauren, Parkhill, Julian, Kim, Maria, Harris, Simon R., Goodfield, Laura L., Fry, Norman K., Gorringe, Andrew R., Nicholson, Tracy L., Register, Karen B., Losada, Liliana, Harvill, Eric T.

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The Gastrodia menghaiensis (Orchidaceae) genome provides new insights of orchid mycorrhizal interactions by Yan Jiang, Xiaodi Hu, Yuan Yuan, Xuelian Guo, Mark W. Chase, Song Ge, Jianwu Li, Jinlong Fu, Kui Li, Meng Hao, Yiming Wang, Yuannian Jiao, Wenkai Jiang, Xiaohua Jin

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The chromosome-scale genome assembly for the West Nile vector Culex quinquefasciatus uncovers patterns of genome evolution in mosquitoes by Sergei S. Ryazansky, Chujia Chen, Mark Potters, Anastasia N. Naumenko, Varvara Lukyanchikova, Reem A. Masri, Ilya I. Brusentsov, Dmitriy A. Karagodin, Andrey A. Yurchenko, Vitor L. dos Anjos, Yuki Haba, Noah H. Rose, Jinna Hoffman, Rong Guo, Theresa Menna, Melissa Kelley, Emily Ferrill, Karen E. Schultz, Yumin Qi, Atashi Sharma, Stéphane Deschamps, Victor Llaca, Chunhong Mao, Terence D. Murphy, Elina M. Baricheva, Scott Emrich, Megan L. Fritz, Joshua B. Benoit, Igor V. Sharakhov, Carolyn S. McBride, Zhijian Tu, Maria V. Sharakhova

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Arsenophonus symbiosis with louse flies: multiple origins, coevolutionary dynamics, and metabolic significance by Jana Martin Říhová, Shruti Gupta, Alistair C. Darby, Eva Nováková, Václav Hypša

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The Brassica Genome by Michael eFreeling, Xiaowu eWang

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Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium by Raúl A. González-Pech, Timothy G. Stephens, Yibi Chen, Amin R. Mohamed, Yuanyuan Cheng, Sarah Shah, Katherine E. Dougan, Michael D. A. Fortuin, Rémi Lagorce, David W. Burt, Debashish Bhattacharya, Mark A. Ragan, Cheong Xin Chan

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Transposable Elements in Bats Show Differential Accumulation Patterns Determined by Class and Functionality by Nicole S. Paulat, Erin McGuire, Krishnamurthy Subramanian, Austin B. Osmanski, Diana D. Moreno-Santillán, David A. Ray, Jinchuan Xing

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Shedding light upon the complex net of genome size, genome composition and environment in chordates by A. Canapa, M. A. Biscotti, M. Barucca, F. Carducci, E. Carotti, E. Olmo

Subjects: “…genome evolution…”
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The Evolution of tRNA Copy Number and Repertoire in Cellular Life by Fenícia Brito Santos, Luiz-Eduardo Del-Bem

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Core genes can have higher recombination rates than accessory genes within global microbial populations by Asher Preska Steinberg, Mingzhi Lin, Edo Kussell

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Genome Synteny Has Been Conserved Among the Octoploid Progenitors of Cultivated Strawberry Over Millions of Years of Evolution by Michael A. Hardigan, Mitchell J. Feldmann, Anne Lorant, Kevin A. Bird, Randi Famula, Charlotte Acharya, Glenn Cole, Patrick P. Edger, Steven J. Knapp

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Reconstructing the genomic architecture of mammalian ancestors using multispecies comparative maps by Murphy William J, Bourque Guillaume, Tesler Glenn, Pevzner Pavel, O'Brien Stephen J

Subjects: “…genome evolution…”
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