Insights into the phylogeny and chloroplast genome evolution of Eriocaulon (Eriocaulaceae) by Enze Li, Kangjia Liu, Rongyan Deng, Yongwei Gao, Xinyu Liu, Wenpan Dong, Zhixiang Zhang

“…Furthermore, comparative analyses of the chloroplast genomes were performed to investigate the chloroplast genome evolution of Eriocaulon. Results The 22 Eriocaulon chloroplast genomes and the nine published samples were proved highly similar in genome size, gene content, and order. …”
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Principles of genome evolution in the Drosophila melanogaster species group. by José M Ranz, Damien Maurin, Yuk S Chan, Marcin von Grotthuss, LaDeana W Hillier, John Roote, Michael Ashburner, Casey M Bergman

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Mitochondrial genome evolution in the Saccharomyces sensu stricto complex. by Jiangxing Ruan, Jian Cheng, Tongcun Zhang, Huifeng Jiang

“…Exploring the evolutionary patterns of mitochondrial genomes is important for our understanding of the Saccharomyces sensu stricto (SSS) group, which is a model system for genomic evolution and ecological analysis. In this study, we first obtained the complete mitochondrial sequences of two important species, Saccharomyces mikatae and Saccharomyces kudriavzevii. …”
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Reciprocal genomic evolution in the ant–fungus agricultural symbiosis by Sanne Nygaard, Haofu Hu, Cai Li, Morten Schiøtt, Zhensheng Chen, Zhikai Yang, Qiaolin Xie, Chunyu Ma, Yuan Deng, Rebecca B. Dikow, Christian Rabeling, David R. Nash, William T. Wcislo, Seán G. Brady, Ted R. Schultz, Guojie Zhang, Jacobus J. Boomsma

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An Important Role for Purifying Selection in Archaeal Genome Evolution by Zhe Lyu, Zhi-Gang Li, Fei He, Ziding Zhang

“…ABSTRACT As the null hypothesis of genome evolution, population genetic theory suggests that selection strength controls genome size. …”
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Structural and Genomic Evolution of RRNPPA Systems and Their Pheromone Signaling by Alonso Felipe-Ruiz, Alberto Marina, Eduardo P. C. Rocha

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Efficient Agent-Based Models for Non-Genomic Evolution by Gupta, N, Agogino, A, Turner, K

The Norway spruce genome sequence and conifer genome evolution. by Nystedt, B, Street, N, Wetterbom, A, Zuccolo, A, Lin, Y, Scofield, D, Vezzi, F, Delhomme, N, Giacomello, S, Alexeyenko, A, Vicedomini, R, Sahlin, K, Sherwood, E, Elfstrand, M, Gramzow, L, Holmberg, K, Hällman, J, Keech, O, Klasson, L, Koriabine, M, Kucukoglu, M, Käller, M, Luthman, J, Lysholm, F, Niittylä, T

Genome evolution and the emergence of pathogenicity in avian Escherichia coli by Mageiros, L, Meric, G, Bayliss, S, Pensar, J, Pascoe, B, Mourkas, E, Calland, J, Yahara, K, Murray, S, Wilkinson, T, Wiliams, L, Hitchings, M, Porter, J, Kemmett, K, Feil, E, Jolley, K, Williams, N, Corander, J, Sheppard, S

Helicobacter pylori genome evolution during human infection. by Kennemann, L, Didelot, X, Aebischer, T, Kuhn, S, Drescher, B, Droege, M, Reinhardt, R, Correa, P, Meyer, T, Josenhans, C, Falush, D, Suerbaum, S

Pseudomonas aeruginosa Genome Evolution in Patients and under the Hospital Environment by Céline Lucchetti-Miganeh, David Redelberger, Gaël Chambonnier, François Rechenmann, Sylvie Elsen, Christophe Bordi, Katy Jeannot, Ina Attrée, Patrick Plésiat, Sophie de Bentzmann

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Unraveling Genome Evolution Throughout Visual Analysis: The XCout Portal by Sergio Diaz-del-Pino, Esteban Perez-Wohlfeil, Oswaldo Trelles

“…Such a shift has encouraged the scientific community to develop new computational methods that are able to compare large genomic sequences, thus enabling large-scale studies of genome evolution. The field of comparative genomics has proven itself invaluable for studying the evolutionary mechanisms and the forces driving genome evolution. …”
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Chloroplast Genome Evolution in Four Montane Zingiberaceae Taxa in China by Qian Yang, Qian Yang, Gao-Fei Fu, Zhi-Qiang Wu, Li Li, Li Li, Jian-Li Zhao, Jian-Li Zhao, Qing-Jun Li, Qing-Jun Li

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Genomic evolution of 11 type strains within family Planctomycetaceae. by Min Guo, Qian Zhou, Yizhuang Zhou, Linfeng Yang, Tianxiang Liu, Jinlong Yang, Yanling Chen, Longxiang Su, Jin Xu, Jing Chen, Feng Liu, Jiapeng Chen, Wenkui Dai, Peixiang Ni, Chengxiang Fang, Ruifu Yang

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Estimation of universal and taxon-specific parameters of prokaryotic genome evolution. by Itamar Sela, Yuri I Wolf, Eugene V Koonin

“…This analysis was based on the strong assumption that parameters of genome evolution are universal across the diversity of bacteria and archaea, and yielded extremely low values of the selection coefficient. …”
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Transposable Elements Co-Option in Genome Evolution and Gene Regulation by Erica Gasparotto, Filippo Vittorio Burattin, Valeria Di Gioia, Michele Panepuccia, Valeria Ranzani, Federica Marasca, Beatrice Bodega

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Genome evolution and the emergence of fruiting body development in Myxococcus xanthus. by Barry Goldman, Swapna Bhat, Lawrence J Shimkets

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tRNAs as a Driving Force of Genome Evolution in Yeast by Ana Rita Guimarães, Inês Correia, Inês Sousa, Carla Oliveira, Gabriela Moura, Ana Rita Bezerra, Manuel A. S. Santos

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A neutral theory of genome evolution and the frequency distribution of genes by Haegeman Bart, Weitz Joshua S

“…Here, we ask: can U-shaped gene frequency distributions, instead, arise generically via neutral processes of genome evolution?</p> <p>Results</p> <p>We introduce a neutral model of genome evolution which combines birth-death processes at the organismal level with gene uptake and loss at the genomic level. …”
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Genome Evolution of Invasive Methicillin-Resistant Staphylococcus aureus in the Americas by Joshua T. Smith, Elissa M. Eckhardt, Nicole B. Hansel, Tahmineh Rahmani Eliato, Isabella W. Martin, Cheryl P. Andam

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