Frequent genetic exchanges revealed by a pan-mitogenome graph of a fungal plant pathogen by Anouk C. van Westerhoven, Jelmer Dijkstra, Jose L. Aznar Palop, Kyran Wissink, Jasper Bell, Gert H. J. Kema, Michael F. Seidl

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GraphAligner: rapid and versatile sequence-to-graph alignment by Mikko Rautiainen, Tobias Marschall

Subjects: “…Genome graphs…”
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NCBI’s Virus Discovery Codeathon: Building “FIVE” —The Federated Index of Viral Experiments API Index by Joan Martí-Carreras, Alejandro Rafael Gener, Sierra D. Miller, Anderson F. Brito, Christiam E. Camacho, Ryan Connor, Ward Deboutte, Cody Glickman, David M. Kristensen, Wynn K. Meyer, Sejal Modha, Alexis L. Norris, Surya Saha, Anna K. Belford, Evan Biederstedt, James Rodney Brister, Jan P. Buchmann, Nicholas P. Cooley, Robert A. Edwards, Kiran Javkar, Michael Muchow, Harihara Subrahmaniam Muralidharan, Charles Pepe-Ranney, Nidhi Shah, Migun Shakya, Michael J. Tisza, Benjamin J. Tully, Bert Vanmechelen, Valerie C. Virta, JL Weissman, Vadim Zalunin, Alexandre Efremov, Ben Busby

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Revisiting the complexity of and algorithms for the graph traversal edit distance and its variants by Yutong Qiu, Yihang Shen, Carl Kingsford

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MoMI-G: modular multi-scale integrated genome graph browser by Toshiyuki T. Yokoyama, Yoshitaka Sakamoto, Masahide Seki, Yutaka Suzuki, Masahiro Kasahara

Subjects: “…Genome graphs…”
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Personalized and graph genomes reveal missing signal in epigenomic data by Cristian Groza, Tony Kwan, Nicole Soranzo, Tomi Pastinen, Guillaume Bourque

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Hyperspectral Image Classification Using Deep Genome Graph-Based Approach by Haron Tinega, Enqing Chen, Long Ma, Richard M. Mariita, Divinah Nyasaka

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Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs by Rachel M. Colquhoun, Michael B. Hall, Leandro Lima, Leah W. Roberts, Kerri M. Malone, Martin Hunt, Brice Letcher, Jane Hawkey, Sophie George, Louise Pankhurst, Zamin Iqbal

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A comprehensive benchmark of graph-based genetic variant genotyping algorithms on plant genomes for creating an accurate ensemble pipeline by Ze-Zhen Du, Jia-Bao He, Wen-Biao Jiao

Subjects: “…Genome graph…”
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Bovine breed-specific augmented reference graphs facilitate accurate sequence read mapping and unbiased variant discovery by Danang Crysnanto, Hubert Pausch

Subjects: “…Variation-aware genome graph…”
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Gramtools enables multiscale variation analysis with genome graphs by Brice Letcher, Martin Hunt, Zamin Iqbal

Subjects: “…Genome graph…”
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Compared analysis with a high-quality genome of weedy rice reveals the evolutionary game of de-domestication by Jie Ma, Jie Ma, Hua Wei, Xiaoman Yu, Xiaoman Yu, Yang Lv, Yu Zhang, Qian Qian, Qian Qian, Lianguang Shang, Longbiao Guo

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Proposing a novel community detection approach to identify cointeracting genomic regions by Mohammadjavad Hosseinpoor, Hamid Parvin, Samad Nejatian, Vahideh Rezaie, Karamollah Bagherifard, Abdollah Dehzangi, Amin Beheshti, Hamid Alinejad-Rokny

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HybridGBN-SR: A Deep 3D/2D Genome Graph-Based Network for Hyperspectral Image Classification by Haron C. Tinega, Enqing Chen, Long Ma, Divinah O. Nyasaka, Richard M. Mariita

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