Transcriptomics resources of human tissues and organs by Mathias Uhlén, Björn M Hallström, Cecilia Lindskog, Adil Mardinoglu, Fredrik Pontén, Jens Nielsen

Subjects: “…genome‐scale metabolic models…”
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Metabolic Modeling and Bidirectional Culturing of Two Gut Microbes Reveal Cross-Feeding Interactions and Protective Effects on Intestinal Cells by Belén Hirmas, Naschla Gasaly, Guillermo Orellana, Marco Vega-Sagardía, Pedro Saa, Martín Gotteland, Daniel Garrido

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Improvement in the prediction power of an astrocyte genome-scale metabolic model using multi-omic data by Andrea Angarita-Rodríguez, Andrea Angarita-Rodríguez, Andrea Angarita-Rodríguez, Nicolás Mendoza-Mejía, Nicolás Mendoza-Mejía, Janneth González, Jason Papin, Jason Papin, Jason Papin, Andrés Felipe Aristizábal, Andrés Pinzón

Subjects: “…genome-scale metabolic models…”
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A Distance-Based Framework for the Characterization of Metabolic Heterogeneity in Large Sets of Genome-Scale Metabolic Models by Andrea Cabbia, Peter A.J. Hilbers, Natal A.W. van Riel

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Genome-scale metabolic model of the versatile bacterium Paracoccus denitrificans Pd1222 by Sergio Bordel, Diego Martín-González, Tim Börner, Raúl Muñoz, Fernando Santos-Beneit

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Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection by Hongzhong Lu, Feiran Li, Le Yuan, Iván Domenzain, Rosemary Yu, Hao Wang, Gang Li, Yu Chen, Boyang Ji, Eduard J Kerkhoven, Jens Nielsen

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A Model Integration Pipeline for the Improvement of Human Genome-Scale Metabolic Reconstructions by Vieira Vítor, Ferreira Jorge, Rodrigues Rúben, Liu Filipe, Rocha Miguel

Subjects: “…genome-scale metabolic models…”
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Combination of network and molecule structure accurately predicts competitive inhibitory interactions by Zahra Razaghi-Moghadam, Ewelina M. Sokolowska, Marcin A. Sowa, Aleksandra Skirycz, Zoran Nikoloski

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Systematic assessment of template-based genome-scale metabolic models created with the BiGG Integration Tool by Oliveira Alexandre, Cunha Emanuel, Cruz Fernando, Capela João, Sequeira João C., Sampaio Marta, Sampaio Cláudia, Dias Oscar

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Identification of anticancer drugs for hepatocellular carcinoma through personalized genome‐scale metabolic modeling by Rasmus Agren, Adil Mardinoglu, Anna Asplund, Caroline Kampf, Mathias Uhlen, Jens Nielsen

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Agent Clustering Strategy Based on Metabolic Flux Distribution and Transcriptome Expression for Novel Drug Development by Yao Ruan, Xiao-Hui Chen, Feng Jiang, Yan-Guang Liu, Xiao-Long Liang, Bo-Min Lv, Hong-Yu Zhang, Qing-Ye Zhang

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Yeast9: a consensus genome-scale metabolic model for S. cerevisiae curated by the community by Chengyu Zhang, Benjamín J Sánchez, Feiran Li, Cheng Wei Quan Eiden, William T Scott, Ulf W Liebal, Lars M Blank, Hendrik G Mengers, Mihail Anton, Albert Tafur Rangel, Sebastián N Mendoza, Lixin Zhang, Jens Nielsen, Hongzhong Lu, Eduard J Kerkhoven

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The gut microbiota modulates host amino acid and glutathione metabolism in mice by Adil Mardinoglu, Saeed Shoaie, Mattias Bergentall, Pouyan Ghaffari, Cheng Zhang, Erik Larsson, Fredrik Bäckhed, Jens Nielsen

Subjects: “…genome‐scale metabolic models…”
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Understanding the Representative Gut Microbiota Dysbiosis in Metformin-Treated Type 2 Diabetes Patients Using Genome-Scale Metabolic Modeling by Dorines Rosario, Rui Benfeitas, Gholamreza Bidkhori, Cheng Zhang, Mathias Uhlen, Saeed Shoaie, Saeed Shoaie, Adil Mardinoglu, Adil Mardinoglu

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Metabolic flux sampling predicts strain-dependent differences related to aroma production among commercial wine yeasts by William T. Scott, Eddy J. Smid, David E. Block, Richard A. Notebaart

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Exploring synergies between plant metabolic modelling and machine learning by Marta Sampaio, Miguel Rocha, Oscar Dias

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Systems Biology: New Insight into Antibiotic Resistance by Piubeli Francine

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LooplessFluxSampler: an efficient toolbox for sampling the loopless flux solution space of metabolic models by Pedro A. Saa, Sebastian Zapararte, Christopher C. Drovandi, Lars K. Nielsen

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Genome‐scale gene/reaction essentiality and synthetic lethality analysis by Patrick F Suthers, Alireza Zomorrodi, Costas D Maranas

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Modeling Red Blood Cell Metabolism in the Omics Era by Alicia Key, Zachary Haiman, Bernhard O. Palsson, Angelo D’Alessandro

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