The genomic epidemiology of Campylobacter from the Republic of South Africa by van Rensburg, M

Subjects: “…Genomic epidemiology…”

Repeated introductions and intensive community transmission fueled a mumps virus outbreak in Washington State by Louise H Moncla, Allison Black, Chas DeBolt, Misty Lang, Nicholas R Graff, Ailyn C Pérez-Osorio, Nicola F Müller, Dirk Haselow, Scott Lindquist, Trevor Bedford

Subjects: Get full text

Genomic evidence of Oropouche virus autochthonous circulation in a small district in the state of Rio de Janeiro, Brazil by Filipe Romero Rebello Moreira, Fábio Luís Lima Monteiro, Mariane Talon de Menezes, Pedro Junior Pinheiro Mourão, Camila de Almeida Velozo, Matheus Villanueva Andrade, Andréa Cony Cavalcanti, Mário Sérgio Ribeiro, Sílvia Cristina de Carvalho, Claudia Maria Braga de Mello, Rafael Mello Galliez, Terezinha Marta Pereira Pinto Castiñeiras, Fernanda de Bruycker Nogueira, Carolina Cardoso dos Santos, Ana Maria Bispo de Filippis, Átila Duque Rossi, Amilcar Tanuri, Carolina Moreira Voloch

Subjects: “…genomic epidemiology…”
Get full text

Streptococcus pyogenes bloodstream infections in an Italian hospital: A ten-year genomic picture by Marta Corbella, Cristina Merla, Angela Kuka, Irene Mileto, Greta Petazzoni, Chiara Rebuffa, Vincenzo Brunco, Stefano Gaiarsa, Fausto Baldanti, Patrizia Cambieri

Subjects: Get full text

The ability of single genes vs full genomes to resolve time and space in outbreak analysis by Gytis Dudas, Trevor Bedford

Subjects: Get full text

Recombination Events Shape the Genomic Evolution of Infectious Bronchitis Virus in Europe by Krisztina Bali, Ádám Bálint, Attila Farsang, Szilvia Marton, Borbála Nagy, Eszter Kaszab, Sándor Belák, Vilmos Palya, Krisztián Bányai

Subjects: Get full text

Comparative Genomics of <i>Legionella pneumophila</i> Isolates from the West Bank and Germany Support Molecular Epidemiology of Legionnaires’ Disease by Ashraf R. Zayed, Dina M. Bitar, Michael Steinert, Christian Lück, Cathrin Spröer, Ingrid Brettar, Manfred G. Höfle, Boyke Bunk

Subjects: “…genomic epidemiology…”
Get full text

Genomic sequencing is required for identification of tuberculosis transmission in Hawaii by Kent J. Koster, Angela Largen, Jeffrey T. Foster, Kevin P. Drees, Lishi Qian, Ed Desmond, Xuehua Wan, Shaobin Hou, James T. Douglas

Subjects: Get full text

Introduction of dengue virus serotype 3 in the Afar Region, Ethiopia by Feleke Mekonnen, Bilal A. Khan, Endalkachew Nibret, Abaineh Munshea, Daniel Tsega, Demeke Endalamaw, Senait Tadesse, Gizachew Yismaw, Damtie Lankir, Jemal Ali, Mariana Ulinici, Emanuele Orsini, Urša Šušnjar, Tea Carletti, Danilo Licastro, Molalegne Bitew, Marta Giovanetti, Alessandro Marcello

Subjects: Get full text

Distribution and Genetic Diversity of Hepatitis E Virus in Wild and Domestic Rabbits in Australia by Maria Jenckel, Ina Smith, Tegan King, Peter West, Patrick L. Taggart, Tanja Strive, Robyn N. Hall

Subjects: Get full text

An Amplicon-Based Approach for the Whole-Genome Sequencing of Human Metapneumovirus by Rachel L. Tulloch, Jen Kok, Ian Carter, Dominic E. Dwyer, John-Sebastian Eden

Subjects: Get full text

A Bayesian evolutionary model towards understanding wildlife contribution to F4-family Mycobacterium bovis transmission in the South-West of France by Hélène Duault, Lorraine Michelet, Maria-Laura Boschiroli, Benoit Durand, Laetitia Canini

Subjects: Get full text

SARS-CoV-2 Genetic Diversity and Lineage Dynamics in Egypt during the First 18 Months of the Pandemic by Wael H. Roshdy, Mohamed K. Khalifa, James Emmanuel San, Houriiyah Tegally, Eduan Wilkinson, Shymaa Showky, Darren Patrick Martin, Monika Moir, Amel Naguib, Nancy Elguindy, Mokhtar R. Gomaa, Manal Fahim, Hanaa Abu Elsood, Amira Mohsen, Ramy Galal, Mohamed Hassany, Richard J. Lessells, Ahmed A. Al-Karmalawy, Rabeh EL-Shesheny, Ahmed M. Kandeil, Mohamed A. Ali, Tulio de Oliveira

Subjects: “…genomic epidemiology…”
Get full text

North–south pathways, emerging variants, and high climate suitability characterize the recent spread of dengue virus serotypes 2 and 3 in the Dominican Republic by Isaac Miguel, Edwin P. Feliz, Robinson Agramonte, Pedro V. Martinez, Carlos Vergara, Yvonne Imbert, Lucia De la Cruz, Nurys de Castro, Odalis Cedano, Yamilka De la Paz, Vagner Fonseca, Gilberto A. Santiago, Jorge L. Muñoz-Jordán, Armando Peguero, Robert Paulino-Ramírez, Nathan D. Grubaugh, Ana Maria Bispo de Filippis, Luiz Carlos Junior Alcantara, Jairo Mendez Rico, José Lourenço, Leticia Franco, Marta Giovanetti

Subjects: Get full text

Methods Combining Genomic and Epidemiological Data in the Reconstruction of Transmission Trees: A Systematic Review by Hélène Duault, Benoit Durand, Laetitia Canini

Subjects: Get full text

Mortality and genetic diversity of antibiotic-resistant bacteria associated with bloodstream infections: a systemic review and genomic analysis by Haitao Zhao, Mengyue Liu, Jie Wu, Shuaiyin Chen, Haiyan Yang, Jinzhao Long, Guangcai Duan

Subjects: Get full text

Post-vaccine epidemiology of serotype 3 pneumococci identifies transformation inhibition through prophage-driven alteration of a non-coding RNA by Min Jung Kwun, Alexandru V. Ion, Hsueh-Chien Cheng, Joshua C. D’Aeth, Sam Dougan, Marco R. Oggioni, David A. Goulding, Stephen D. Bentley, Nicholas J. Croucher

Subjects: “…Genomic epidemiology…”
Get full text

Phylogeographical Analysis Reveals the Historic Origin, Emergence, and Evolutionary Dynamics of Methicillin-Resistant Staphylococcus aureus ST228 by Mohamed M. H. Abdelbary, Mohamed M. H. Abdelbary, Edward J. Feil, Laurence Senn, Christiane Petignat, Guy Prod’hom, Jacques Schrenzel, Patrice François, Guido Werner, Franziska Layer, Birgit Strommenger, Annalisa Pantosti, Monica Monaco, Olivier Denis, Olivier Denis, Ariane Deplano, Hajo Grundmann, Dominique S. Blanc

Subjects: Get full text

Empirically derived sequence similarity thresholds to study the genomic epidemiology of plasmids shared among healthcare-associated bacterial pathogensResearch in context by Daniel Evans, Alexander Sundermann, Marissa Griffith, Vatsala Rangachar Srinivasa, Mustapha Mustapha, Jieshi Chen, Artur Dubrawski, Vaughn Cooper, Lee Harrison, Daria Van Tyne

Subjects: Get full text

Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia by Allison Black, Louise H. Moncla, Katherine Laiton-Donato, Barney Potter, Lissethe Pardo, Angelica Rico, Catalina Tovar, Diana P. Rojas, Ira M. Longini, M. Elizabeth Halloran, Dioselina Peláez-Carvajal, Juan D. Ramírez, Marcela Mercado-Reyes, Trevor Bedford

Subjects: Get full text