Contact investigations for outbreaks of Mycobacterium tuberculosis: Advances through whole genome sequencing by Walker, T, Monk, P, Smith, E, Peto, T

“…However, epidemiological data are often challenging to obtain, and genotyping data are difficult to interpret without them. Whole genome sequencing (WGS) technology is increasingly affordable, and offers the prospect of identifying plausible transmission events between patients without prior recourse to epidemiological data. …”

Factors influencing meiotic recombination revealed by whole-genome sequencing of single sperm by Hinch, A, Zhang, G, Becker, P, Moralli, D, Hinch, R, Davies, B, Bowden, R, Donnelly, P

Complete genome sequence of Neisseria meningitidis serogroup B strain MC58. by Tettelin, H, Saunders, N, Heidelberg, J, Jeffries, A, Nelson, K, Eisen, J, Ketchum, K, Hood, D, Peden, J, Dodson, R, Nelson, W, Gwinn, M, DeBoy, R, Peterson, J, Hickey, E, Haft, D, Salzberg, S, White, O, Fleischmann, R, Dougherty, B, Mason, T, Ciecko, A, Parksey, D, Blair, E, Cittone, H

Contact investigations for outbreaks of Mycobacterium tuberculosis: advances through whole genome sequencing. by Walker, T, Monk, P, Smith, E, Peto, T

“…However, epidemiological data are often challenging to obtain, and genotyping data are difficult to interpret without them. Whole genome sequencing (WGS) technology is increasingly affordable, and offers the prospect of identifying plausible transmission events between patients without prior recourse to epidemiological data. …”

The genome sequence of the Northern Deep-brown Dart, Aporophyla lueneburgensis (Freyer, 1848) by Boyes, D, Holland, PWH

“…We present a genome assembly from an individual female <i>Aporophyla lueneburgensis</i> (the Northern Deep-brown Dart; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 978.3 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. …”

The use of whole genome sequencing for the analysis of isolates belonging to the bacterial genus Salmonella by Pearce, M

“…A review was conducted in Chapter Two to establish the impact of whole genome sequencing on public health to date.</p> <p>The analyses undertaken here were primarily conducted by upscaling the MLST- approach. …”

Complete Genome Sequence of KPC-Producing Klebsiella pneumoniae Strain CAV1193. by Sheppard, A, Stoesser, N, Sebra, R, Kasarskis, A, Deikus, G, Anson, L, Walker, A, Peto, T, Crook, D, Mathers, A

Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. by Parkhill, J, Sebaihia, M, Preston, A, Murphy, L, Thomson, N, Harris, D, Holden, M, Churcher, C, Bentley, S, Mungall, K, Cerdeño-Tárraga, A, Temple, L, James, K, Harris, B, Quail, M, Achtman, M, Atkin, R, Baker, S, Basham, D, Bason, N, Cherevach, I, Chillingworth, T, Collins, M, Cronin, A, Davis, P

The role of whole-genome sequencing technology in the control and treatment of Mycobacterium tuberculosis infection by Walker, T

“…These findings have contributed to the decision by Public Health England to invest in the routine whole-genome sequencing of <em>M. tuberculosis</em> from 2015. …”

Genome sequence of an unclassified pleosporales species isolated from human nasopharyngeal aspirate by Ng, Kee Peng, Yew, Su Mei, Chan, Chai Ling, Tuck Soon, S.H., Shiang, L.N., Hassan, Hamimah, Ngeow, Yun Fong, Chee, Choong Hoh, Kok, W.L., Wai, Y.Y.

“…We report the 36,814,818-bp draft genome sequence and gene annotation of UM1110, a Pleosporales isolate associated with unclassified genera that is potentially a new fungal species. …”
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Genome sequence of Streptomyces pluripotens MUSC 135(T) exhibiting antibacterial and antioxidant activity by Ser, Hooi Leng, Tan, Wen Si, Ab Mutalib, Nurul Syakima, Cheng, Huey Jia, Yin, Wai Fong, Chan, Kok Gan, Lee, Learn Han

Draft genome sequence of a marine actinobacteria Sciscionella strain SE31 by Teo, W.F.A., Wee, W.Y., Choo, S.W., Tan, G.Y.A.

“…The high quality draft genome sequence of Sciscionella strain SE31 with a genome size of approximately 7.4. …”

Draft genome sequence of Vitellibacter aquimaris D-24 T isolated from seawater by Thevarajoo, Suganthi, Selvaratnam, Chitra, Chan, Kok Gan, Goh, Kian Mau, Chong, Chun Shiong

“…Here, we present the draft genome sequence of D-24T with a genome size of approximately 3.1 Mbp and G + C content of 39.93%. …”

Genome sequence of Streptomyces gilvigriseus MUSC 26 T isolated from mangrove forest by Ser, Hooi Leng, Tan, Wen Si, Mutalib, Nurul Syakima Ab, Yin, Wai Fong, Chan, Kok Gan, Goh, Bey Hing, Lee, Learn-Han

Complete genome sequence analysis of dengue virus type 2 isolated in Brunei by Osman, O., Fong, M.Y., Devi, S.

“…DEN-2 was the predominant serotype followed by DEN-1. The full genomic sequences of 3 DEN-2 viruses isolated during the 2005-2006 dengue incident in Brunei were determined. …”
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Genome sequence of an unclassified pleosporales species isolated from human nasopharyngeal aspirate by Ng, K.P., Yew, S.M., Chan, C.L., Soo-Hoo, T.S., Na, S.L., Hassan, H., Ngeow, Y.F., Hoh, C.C., Lee, K.W., Yee, W.Y.

“…We report the 36,814,818-bp draft genome sequence and gene annotation of UM1110, a Pleosporales isolate associated with unclassified genera that is potentially a new fungal species. …”
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Phylogenetic designation of enterovirus 71 genotypes and subgenotypes using complete genome sequences by Chan, Y.F., Sam, I.C., AbuBakar, Sazaly

“…A phylogenetic tree built using the full genome sequences is robust as it takes into consideration changes in the sequences of both the structural and non-structural genes. …”
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Genome sequencing of three Vibriophages capable of controlling Pathogenic Vibrio bacteria in aquaculture by Julian Ransangan

“…This study was conducted to analyze the complete genome sequence of two Vibriophages designated as VALLPKK3 and VPLPKKS. …”
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The complete chloroplast genome sequence of Durio oxleyanus (Malvaceae) and its phylogenetic position by Wong, Xue Jing, Law, Douglas, Zheng, Feng Wang, Ramaiya, Shiamala Devi, Lee, Shiou Yih

Genome sequencing of Malaysian Newcastle disease viruses using next generation sequencing by Satharasinghe, Dilan Amila, Tan, Sheau Wei, Yeap, Swee Keong, Munir, Muhammad, Ideris, Aini, Omar, Abdul Rahman

“…This protocol was able to generate accurate consensus-level full genome sequences for 5 virulent NDVs obtained from outbreaks during 2004 to 2013. …”
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