Whole-genome sequencing of Aspergillus terreus species complex by Palanivel, Mathangi, Aogáin, Micheál Mac, Purbojati, Rikky Wenang, Uchida, Akira, Aung, Ngu War, Lim, Serene Boon Yuean, Putra, Alexander, Drautz-Moses, Daniela Isabel, Seaton, Shila, Rogers, Thomas R., Schuster, Stephan Christoph, Chotirmall, Sanjay Haresh

“…Currently, an understanding of A. terreus pathogenicity is impeded by a limited number of whole-genome sequences of this fungal pathogen. We here describe a high-quality whole-genome assembly of European A. terreus clinical isolate M6925, derived by single-molecule real-time sequencing with short-read polishing.…”
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The utility of complete genome sequences in the study of pathogenic bacteria. by Hood, D

“…The availability of complete genome sequences is a revolution in the study of microorganisms. …”

The first genome sequences of human bocaviruses from Vietnam. by Thanh, T, Van, H, Hong, N, Nhu, L, Anh, N, Tuan, H, Hien, H, Tuong, N, Kien, T, Khanh, T, Nhan, L, Hung, N, Chau, N, Thwaites, G, van Doorn, H, Tan, L

“…As part of an ongoing effort to generate complete genome sequences of hand, foot and mouth disease-causing enteroviruses directly from clinical specimens, two complete coding sequences and two partial genomic sequences of human bocavirus 1 (n=3) and 2 (n=1) were co-amplified and sequenced, representing the first genome sequences of human bocaviruses from Vietnam. …”

Transcriptome and genome sequencing uncovers functional variation in humans by Lappalainen, T, Sammeth, M, Friedländer, MR, 'T Hoen, P, Monlong, J, Rivas, M, Gonzàlez-Porta, M, Kurbatova, N, Griebel, T, Ferreira, P, Barann, M, Wieland, T, Greger, L, Van Iterson, M, Almlöf, J, Ribeca, P, Pulyakhina, I, Esser, D, Giger, T, Tikhonov, A, Sultan, M, Bertier, G, Macarthur, D, Lek, M, Lizano, E

“…Genome sequencing projects are discovering millions of genetic variants in humans, and interpretation of their functional effects is essential for understanding the genetic basis of variation in human traits. …”

The first genome sequences of human bocaviruses from Vietnam by Thanh, TT, Van, HMT, Hong, NTT, Nhu, LNT, Anh, NT, Tuan, HM, Hien, HV, Tuong, NM, Kien, TT, Khanh, TH, Nhan, LNT, Hung, NT, Chau, NVV, Thwaites, GE, van Doorn, HR, Tan, LV

“…As part of an ongoing effort to generate complete genome sequences of hand, foot and mouth disease-causing enteroviruses directly from clinical specimens, two complete coding sequences and two partial genomic sequences of human bocavirus 1 (n=3) and 2 (n=1) were co-amplified and sequenced, representing the first genome sequences of human bocaviruses from Vietnam. …”

Genome Sequences of a Novel Vietnamese Bat Bunyavirus by Oude Munnink, B, Phan, M, van der Hoek, L, Kellam, P, Cotten, M, the VIZIONS Consortium

Insights into vertebrate evolution from the chicken genome sequence

Whole Genome Sequencing in Twins Discordant for 27 Diseases by Ebers, G, Ramagopalan, S

Transcriptome and genome sequencing uncovers functional variation in humans. by Lappalainen, T, Sammeth, M, Friedländer, MR, 't Hoen, P, Monlong, J, Rivas, M, Gonzàlez-Porta, M, Kurbatova, N, Griebel, T, Ferreira, P, Barann, M, Wieland, T, Greger, L, van Iterson, M, Almlöf, J, Ribeca, P, Pulyakhina, I, Esser, D, Giger, T, Tikhonov, A, Sultan, M, Bertier, G, MacArthur, D, Lek, M, Lizano, E

“…Genome sequencing projects are discovering millions of genetic variants in humans, and interpretation of their functional effects is essential for understanding the genetic basis of variation in human traits. …”

Genome sequence of Yersinia pestis, the causative agent of plague. by Parkhill, J, Wren, B, Thomson, N, Titball, R, Holden, M, Prentice, M, Sebaihia, M, James, K, Churcher, C, Mungall, K, Baker, S, Basham, D, Bentley, S, Brooks, K, Cerdeño-Tárraga, A, Chillingworth, T, Cronin, A, Davies, R, Davis, P, Dougan, G, Feltwell, T, Hamlin, N, Holroyd, S, Jagels, K, Karlyshev, A

“…Here we report the complete genome sequence of Y. pestis strain CO92, consisting of a 4.65-megabase (Mb) chromosome and three plasmids of 96.2 kilobases (kb), 70.3 kb and 9.6 kb. …”

The implementation of whole-genome sequencing for Mycobacterium tuberculosis in Vietnam by Huong, DT, Walker, TM, Ha, DT, Crook, DW, Thwaites, GE, Thuong, NTT

Insights into hominid evolution from the gorilla genome sequence. by Scally, A, Dutheil, J, Hillier, L, Jordan, G, Goodhead, I, Herrero, J, Hobolth, A, Lappalainen, T, Mailund, T, Marques-Bonet, T, McCarthy, S, Montgomery, S, Schwalie, P, Tang, Y, Ward, M, Xue, Y, Yngvadottir, B, Alkan, C, Andersen, L, Ayub, Q, Ball, E, Beal, K, Bradley, B, Chen, Y, Clee, C, Fitzgerald, S, Graves, T, Gu, Y, Heath, P, Heger, A, Karakoc, E, Kolb-Kokocinski, A, Laird, G, Lunter, G, Meader, S, Mort, M, Mullikin, J, Munch, K, O'Connor, T, Phillips, A, Prado-Martinez, J, Rogers, A, Sajjadian, S, Schmidt, D, Shaw, K, Simpson, J, Stenson, P, Turner, D, Vigilant, L, Vilella, A, Whitener, W, Zhu, B, Cooper, D, de Jong, P, Dermitzakis, E, Eichler, E, Flicek, P, Goldman, N, Mundy, N, Ning, Z, Odom, D, Ponting, C, Quail, M, Ryder, O, Searle, S, Warren, W, Wilson, R, Schierup, M, Rogers, J, Tyler-Smith, C, Durbin, R

“…Here we present the assembly and analysis of a genome sequence for the western lowland gorilla, and compare the whole genomes of all extant great ape genera. …”

Haemophilus influence: the impact of whole genome sequencing on microbiology. by Tang, C, Hood, D, Moxon, E

“…The publication of the Haemophilus influenzae genome sequence in 1995 was a landmark in microbiological research. …”

Integration of telomere sequences with the draft human genome sequence. by Riethman, H, Xiang, Z, Paul, S, Morse, E, Hu, X, Flint, J, Chi, H, Grady, D, Moyzis, R

Genome sequence of the human malaria parasite Plasmodium falciparum. by Gardner, M, Hall, N, Fung, E, White, O, Berriman, M, Hyman, R, Carlton, J, Pain, A, Nelson, K, Bowman, S, Paulsen, I, James, K, Eisen, J, Rutherford, K, Salzberg, S, Craig, A, Kyes, S, Chan, MS, Nene, V, Shallom, S, Suh, B, Peterson, J, Angiuoli, S, Pertea, M, Allen, J

“…Here we report an analysis of the genome sequence of P. falciparum clone 3D7. The 23-megabase nuclear genome consists of 14 chromosomes, encodes about 5,300 genes, and is the most (A + T)-rich genome sequenced to date. …”

The genome sequence of the snout, Hypena proboscidalis (Linnaeus, 1758) by Boyes, D, Holland, PWH

“…We present a genome assembly from an individual female Hypena proboscidalis (the snout; Arthropoda; Insecta; Lepidoptera; Erebidae). The genome sequence is 637 megabases in span. The majority of the assembly is scaffolded into 31 chromosomal pseudomolecules, with the Z sex chromosome assembled.…”

The Norway spruce genome sequence and conifer genome evolution. by Nystedt, B, Street, N, Wetterbom, A, Zuccolo, A, Lin, Y, Scofield, D, Vezzi, F, Delhomme, N, Giacomello, S, Alexeyenko, A, Vicedomini, R, Sahlin, K, Sherwood, E, Elfstrand, M, Gramzow, L, Holmberg, K, Hällman, J, Keech, O, Klasson, L, Koriabine, M, Kucukoglu, M, Käller, M, Luthman, J, Lysholm, F, Niittylä, T

The genome sequence of the Phoenix, Eulithis prunata (Linnaeus, 1758) by Boyes, D, Holland, PWH

“…We present a genome assembly from an individual male <i>Eulithis prunata</i> (the Phoenix; Arthropoda; Insecta; Lepidoptera; Geometridae). The genome sequence is 263.1 megabases in span. Most of the assembly is scaffolded into 30 chromosomal pseudomolecules, including the Z sex chromosome. …”

Returning genome sequences to research participants: policy and practice by Wright, CF, Middleton, A, Barrett, JC, Firth, HV, FitzPatrick, DR, Hurles, ME, Parker, M

“…Despite advances in genomic science stimulating an explosion of literature around returning health-related findings, the possibility of returning entire genome sequences to individual research participants has not been widely considered. …”

The genome sequence of the Miller, Acronicta leporina (Linnaeus, 1758) by Boyes, D, Holland, PWH

“…We present a genome assembly from an individual female Acronicta leporina (the Miller; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 466 megabases in span. Most of the assembly is scaffolded into 32 chromosomal pseudomolecules, including the W and Z sex chromosomes. …”