Paleovirology: inferring viral evolution from host genome sequence data. by Katzourakis, A

The genome sequence of the Brown House-moth, Hofmannophila pseudospretella (Stainton, 1849) by Boyes, D, Holland, PWH

“…We present a genome assembly from an individual male Hofmannophila pseudospretella (the Brown House-moth; Arthropoda; Insecta; Lepidoptera; Oecophoridae). The genome sequence is 406.2 megabases in span. Most of the assembly is scaffolded into 28 chromosomal pseudomolecules, including the Z sex chromosome. …”

The genome sequence of the silver Y moth, Autographa gamma (Linnaeus, 1758) by Boyes, D, Holland, PWH

“…We present a genome assembly from an individual female Autographa gamma (the silver Y; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 373 megabases in span. The majority of the assembly (99.65%) is scaffolded into 32 chromosomal pseudomolecules, with the W and Z sex chromosomes assembled. …”

Identification of Salmonella for public health surveillance using whole genome sequencing by Ashton, P, Nair, S, Peters, T, Bale, J, Powell, D, Painset, A, Tewolde, R, Schaefer, U, Jenkins, C, Dallman, T, De Pinna, E, Grant, K

“… <p style="text-align:justify;"> In April 2015, Public Health England implemented whole genome sequencing (WGS) as a routine typing tool for public health surveillance of Salmonella, adopting a multilocus sequence typing (MLST) approach as a replacement for traditional serotyping. …”

The genome sequence of the Bordered Straw, Heliothis peltigera (Denis & Schiffermüller) 1775 by Wawman, D, Crowley, L, University of Oxford and Wytham Woods Genome Acquisition Lab, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics team, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium

“…We present a genome assembly from an individual male Heliothis peltigera (the Bordered Straw; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 332.8 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. …”

The genome sequence of the Blood-vein moth, Timandra comae Schmidt, 1931 by Wawman, DC

“…We present a genome assembly from an individual male Timandra comae (the Blood-vein; Arthropoda; Insecta; Lepidoptera; Geometridae). The genome sequence is 334.4 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. …”

The genome sequence of the bramble shoot moth, Notocelia uddmanniana (Linnaeus, 1758) by Boyes, D, Holland, PWH

“…We present a genome assembly from an individual male Notocelia uddmanniana (the bramble shoot moth; Arthropoda; Insecta; Lepidoptera; Tortricidae). The genome sequence is 794 megabases in span. The majority of the assembly, 99.96%, is scaffolded into 28 chromosomal pseudomolecules, with the Z sex chromosome assembled.…”

The genome sequence of the White-point, Mythimna albipuncta (Denis & Schiffermüller, 1775) by Boyes, D, Holland, PWH

“…We present a genome assembly from an individual male Mythimna albipuncta (the White-point; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 698.6 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. …”

Whole-genome sequencing to determine Neisseria gonorrhoeae transmission: an observational study by De Silva, D, Wilson, D, Crook, D, Peto, T, Waldram, A, Eyre, D, Peters, J, Cole, K, Cole, M, Cresswell, F, Dean, G, Dave, J, Thomas, D, Foster, K, Didelot, X, Grad, Y, Walker, A, Paul, J

The genome sequence of the Rustic Shoulder-knot, Apamea sordens (Hufnagel, 1766) by Boyes, D, Holland, PWH

“…We present a genome assembly from an individual male Apamea sordens (the Rustic Shoulder-knot; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 614 megabases in span. The whole assembly is scaffolded into 31 chromosomal pseudomolecules, including the assembled Z sex chromosome. …”

The genome sequence of the Cloaked Minor, Mesoligia furuncula (Denis & Schiffermüller, 1775) by Boyes, D, Broad, GR, Holland, PWH

“…We present a genome assembly from an individual female Mesoligia furuncula (the Cloaked Minor; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 889.6 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. …”

The genome sequence of the dun-bar pinion, Cosmia trapezina (Linnaeus, 1758) by Boyes, D, Godfray, C, Holland, PWH

“…We present a genome assembly from an individual male Cosmia trapezina (dun-bar pinion; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 825 megabases in span. The majority of the assembly (99.87%) is scaffolded into 32 chromosomal pseudomolecules with the Z chromosome assembled. …”

The genome sequence of the Heart and Club moth, Agrotis clavis (Hufnagel, 1766) by Wawman, D

“…We present a genome assembly from an individual male Agrotis clavis (the Heart and Club moth; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 751.1 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. …”

The genome sequence of the peach blossom moth, Thyatira batis (Linnaeus, 1758) by Boyes, D, Holland, PWH

“…We present a genome assembly from an individual male Thyatira batis (the peach-blossom moth; Arthropoda; Insecta; Lepidoptera; Drepanidae). The genome sequence is 315 megabases in span. The majority of the assembly (99.68%) is scaffolded into 31 chromosomal pseudomolecules, with the Z sex chromosome assembled. …”

The genome sequence of a pipunculid fly, Nephrocerus scutellatus (Macquart, 1834) by Falk, S, Wawman, D

“…We present a genome assembly from an individual female Nephrocerus scutellatus (pipunculid fly; Arthropoda; Insecta; Diptera; Pipunculidae). The genome sequence is 613.4 megabases in span. Most of the assembly is scaffolded into 6 chromosomal pseudomolecules, including the X sex chromosome. …”

Utility of whole-genome sequencing in the clinical diagnostic of rare inherited anaemias by C Camps, NBA Roy, H Dreau, S Henderson, SJL Knight, EM Kvikstad, MM Pentony, M Proven, A Schuh, JC Taylor

[Genome sequencing and genetic mapping to dissect the genetic basis of complex traits]. by Baud, A, Calderari, S, Mott, R, Flint, J, Gauguier, D

The genome sequence of the Red-green Carpet, Chloroclysta siterata (Hufnagel, 1767) by Boyes, D, Holland, PWH

“…<p>We present a genome assembly from an individual male <em>Chloroclysta siterata</em> (the Red-green Carpet; Arthropoda; Insecta; Lepidoptera; Geometridae). The genome sequence is 437.9 megabases in span. Most of the assembly is scaffolded into 21 chromosomal pseudomolecules including the Z sex chromosome. …”

Whole genome sequencing for M/XDR tuberculosis surveillance and for resistance testing by Walker, T, Merker, M, Kohl, T, Crook, D, Niemann, S, Peto, T

“…Whole genome sequencing (WGS) can help to relate Mycobacterium tuberculosis genomes to one another to assess genetic relatedness and infer the likelihood of transmission between cases. …”

Diverse sources of C. difficile infection identified on whole-genome sequencing. by Eyre, D, Cule, M, Wilson, D, Griffiths, D, Vaughan, A, O'Connor, L, Ip, C, Golubchik, T, Batty, E, Finney, J, Wyllie, D, Didelot, X, Piazza, P, Bowden, R, Dingle, K, Harding, R, Crook, D, Wilcox, M, Peto, T, Walker, A

“…METHODS: From September 2007 through March 2011, we performed whole-genome sequencing on isolates obtained from all symptomatic patients with C. difficile infection identified in health care settings or in the community in Oxfordshire, United Kingdom. …”