A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss) by Jacob Agerbo Rasmussen, Kasper Rømer Villumsen, Madeleine Ernst, Martin Hansen, Torunn Forberg, Shyam Gopalakrishnan, M. Thomas P. Gilbert, Anders Miki Bojesen, Karsten Kristiansen, Morten Tønsberg Limborg

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Bacterial topography of the upper and lower respiratory tract in pigs by Mattia Pirolo, Carmen Espinosa-Gongora, Antton Alberdi, Raphael Eisenhofer, Matteo Soverini, Esben Østergaard Eriksen, Ken Steen Pedersen, Luca Guardabassi

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Progressive evolution of secondary aquatic adaptation in hippos and cetaceans by Lei Chen, Zihe Li, Baosheng Wu, Botong Zhou, Rasmus Heller, Jiong Zhou, Kun Wang, Zeshan Lin, Dongdong Wu, Qiang Qiu

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Real‐time genomics for One Health by Lara Urban, Albert Perlas, Olga Francino, Joan Martí‐Carreras, Brenda A Muga, Jenniffer W Mwangi, Laura Boykin Okalebo, Jo‐Ann L Stanton, Amanda Black, Nick Waipara, Claudia Fontsere, David Eccles, Harika Urel, Tim Reska, Hernán E Morales, Marc Palmada‐Flores, Tomas Marques‐Bonet, Mrinalini Watsa, Zane Libke, Gideon Erkenswick, Cock vanOosterhout

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Pouch bacteria: an understudied and potentially important facet of marsupial reproduction by Raphael Eisenhofer, Toby Maidment

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Mammal mitogenomics from invertebrate‐derived DNA by Renita Danabalan, Kevin Merkel, Ida Bærholm Schnell, Mimi Arandjelovic, Christophe Boesch, Gregory Brazzola, Paula Dieguez, Jef Dupain, Magloire Kambale‐Vyalengerera, Hjalmar S. Kühl, Constanze Hoffmann, Juan Lapuente, Van Ngoc Thinh, Fee Zimmermann, Fabian H. Leendertz, M. Thomas P. Gilbert, Christian Roos, Camila Mazzoni, Jan F. Gogarten, Sébastien Calvignac‐Spencer

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Ancient Metagenomic Studies: Considerations for the Wider Scientific Community by Clio Der Sarkissian, Irina M. Velsko, Anna K. Fotakis, Åshild J. Vågene, Alexander Hübner, James A. Fellows Yates

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Recovering High‐Quality Host Genomes from Gut Metagenomic Data through Genotype Imputation by Sofia Marcos, Melanie Parejo, Andone Estonba, Antton Alberdi

“…This method enables leveraging insofar discarded host DNA to get insights into the genetic structure of host populations, and in doing so, facilitates the implementation of hologenomic approaches that jointly analyze host and microbial genomic data.…”
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Large haploblocks underlie rapid adaptation in the invasive weed Ambrosia artemisiifolia by Paul Battlay, Jonathan Wilson, Vanessa C. Bieker, Christopher Lee, Diana Prapas, Bent Petersen, Sam Craig, Lotte van Boheemen, Romain Scalone, Nissanka P. de Silva, Amit Sharma, Bojan Konstantinović, Kristin A. Nurkowski, Loren H. Rieseberg, Tim Connallon, Michael D. Martin, Kathryn A. Hodgins

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Monitoring the viable grapevine microbiome to enhance the quality of wild wines by Stephen P. Kidd, Susan E. P. Bastian, Raphael Eisenhofer, Brady L. Welsh

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Environmental niche and flight intensity are associated with molecular evolutionary rates in a large avian radiation by Paola Montoya, Carlos Daniel Cadena, Santiago Claramunt, David Alejandro Duchêne

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Exploring the connectivity between rhizosphere microbiomes and the plant genes: A way forward for sustainable increase in primary productivity by Ayomide E. Fadiji, Rutwik Barmukh, Rajeev K. Varshney, Brajesh K. Singh

“…We conclude that the adoption of a hologenomics approach (i.e., considering both the plant genome and the genomes of all microorganisms colonizing the plant) can significantly advance our understanding of plant resistance and resilience to biotic and abiotic stresses. …”
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Integration of fluorescence in situ hybridization and chromosome-length genome assemblies revealed synteny map for guinea pig, naked mole-rat, and human by Svetlana A. Romanenko, Sergei F. Kliver, Natalia A. Serdyukova, Polina L. Perelman, Vladimir A. Trifonov, Andrei Seluanov, Vera Gorbunova, Jorge Azpurua, Jorge C. Pereira, Malcolm A. Ferguson-Smith, Alexander S. Graphodatsky

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The formation of the Indo-Pacific montane avifauna by Andrew Hart Reeve, Jonathan David Kennedy, José Martín Pujolar, Bent Petersen, Mozes P. K. Blom, Per Alström, Tri Haryoko, Per G. P. Ericson, Martin Irestedt, Johan A. A. Nylander, Knud Andreas Jønsson

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Diverse Prophage Elements of <i>Salmonella enterica</i> Serovars Show Potential Roles in Bacterial Pathogenicity by Kirstie Andrews, Toby Landeryou, Thomas Sicheritz-Pontén, Janet Yakubu Nale

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The Contribution of Desert-Dwelling Bats to Pest Control in Hyper-Arid Date Agriculture by Jessica Schäckermann, Evie J. Morris, Antton Alberdi, Orly Razgour, Carmi Korine

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Sarcoptic mange changes bacterial and fungal microbiota of bare-nosed wombats (Vombatus ursinus) by Christina Næsborg-Nielsen, Raphael Eisenhofer, Tamieka A. Fraser, Vicky Wilkinson, Christopher P. Burridge, Scott Carver

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Diversity, Dynamics and Therapeutic Application of <i>Clostridioides difficile</i> Bacteriophages by Janet Y. Nale, Anisha M. Thanki, Srwa J. Rashid, Jinyu Shan, Gurinder K. Vinner, Ahmed S. A. Dowah, Jeffrey K. J. Cheng, Thomas Sicheritz-Pontén, Martha R. J. Clokie

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Benchmarking freely available HLA typing algorithms across varying genes, coverages and typing resolutions by Nikolas Hallberg Thuesen, Nikolas Hallberg Thuesen, Michael Schantz Klausen, Shyam Gopalakrishnan, Thomas Trolle, Gabriel Renaud

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Genomics reveals introgression and purging of deleterious mutations in the Arabian leopard (Panthera pardus nimr) by Gabriel Mochales-Riaño, Claudia Fontsere, Marc de Manuel, Adrián Talavera, Bernat Burriel-Carranza, Héctor Tejero-Cicuéndez, Raed Hamoud M. AlGethami, Mohammed Shobrak, Tomas Marques-Bonet, Salvador Carranza

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