Holobionts and their hologenomes: Evolution with mixed modes of inheritance by Karen Luisa Haag

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A global initiative for ecological and evolutionary hologenomics by Leonard, A, Earth Hologenome Initiative Consortium, Alberdi, A

“…The Earth Hologenome Initiative (EHI) is a global collaboration to generate and analyse hologenomic data from wild animals and associated microorganisms using standardised methodologies underpinned by open and inclusive research principles. …”

Cognition, Information Fields and Hologenomic Entanglement: Evolution in Light and Shadow by William B. Miller

Subjects: “…hologenome…”
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Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes. by Seth R Bordenstein, Kevin R Theis

“…As such, their collective genomes forge a "hologenome," and models of animal and plant biology that do not account for these intergenomic associations are incomplete. …”
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Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat by Zepeda Mendoza, M, Xiong, Z, Escalera-Zamudio, M, Runge, A, Thézé, J, Streicker, D, Frank, H, Loza-Rubio, E, Liu, S, Ryder, O, Samaniego Castruita, J, Katzourakis, A, Pacheco, G, Taboada, B, Löber, U, Pybus, O, Li, Y, Rojas-Anaya, E, Bohmann, K, Carmona Baez, A, Arias, C, Liu, S, Greenwood, A, Bertelsen, M, White, N, Bunce, M, Zhang, G, Sicheritz-Pontén, T, Gilbert, M

“…Adaptation to specialized diets often requires modifications at both genomic and microbiome levels. We applied a hologenomic approach to the common vampire bat (Desmodus rotundus), one of the only three obligate blood-feeding (sanguivorous) mammals, to study the evolution of its complex dietary adaptation. …”

Modulation of Porcine Gut Microbiota and Microbiome: Hologenomic, Dietary, and Endogenous Factors by Ming Z. Fan, Sung Woo Kim

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Evaluating the hologenome concept by analyzing the root-endosphere microbiota of chimeric plants by Marine Biget, Tingting Wang, Cendrine Mony, Qicheng Xu, Lucie Lecoq, Véronique Chable, Kevin R. Theis, Ning Ling, Philippe Vandenkoornhuyse

“…Summary: The hologenome concept considers the entity formed by a host and its microbiota, the holobiont, as new level of hierarchical organization subject to neutral and selective forces. …”
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Comparative hologenomics of two Ixodes scapularis tick populations in New Jersey by Dana C. Price, Julia R. Brennan, Nicole E. Wagner, Andrea M. Egizi

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Review: Diving into the cow hologenome to reduce methane emissions and increase sustainability by Oscar Gonzalez-Recio, Natalia Scrobota, Javier López-Paredes, Alejandro Saborío-Montero, Almudena Fernández, Evangelina López de Maturana, Beatriz Villanueva, Idoia Goiri, Raquel Atxaerandio, Aser García-Rodríguez

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Hologenome analysis reveals independent evolution to chemosymbiosis by deep-sea bivalves by Yang Guo, Lingfeng Meng, Minxiao Wang, Zhaoshan Zhong, Denghui Li, Yaolei Zhang, Hanbo Li, Huan Zhang, Inge Seim, Yuli Li, Aijun Jiang, Qianyue Ji, Xiaoshan Su, Jianwei Chen, Guangyi Fan, Chaolun Li, Shanshan Liu

“…Here, we investigate the hologenome of an extracellular symbiotic thyasirid clam that represents the early stages of symbiosis evolution. …”
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Exploring the Influence of Ecological Niches and Hologenome Dynamics on the Growth of <i>Encephalartos villosus</i> in Scarp Forests by Nqobile Motsomane, Terence N. Suinyuy, María A. Pérez-Fernández, Anathi Magadlela

“…This study challenged the conventional expectation that environmental filters alone dictate microbial community composition in similar habitats and revealed that host-microbe interactions, as proposed by the hologenome theory, are significant drivers of microbial community structuring. …”
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Niche–dependent sponge hologenome expression profiles and the host-microbes interplay: a case of the hawaiian demosponge Mycale Grandis by Fang Liu, Taewoo Ryu, Timothy Ravasi, Xin Wang, Guangyi Wang, Zhiyong Li

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Co‐occurring orchid species associated with different low‐abundance mycorrhizal fungi from the soil in a high‐diversity conservation area in Denmark by Ida Hartvig, Chatchai Kosawang, Hanne Rasmussen, Erik Dahl Kjær, Lene Rostgaard Nielsen

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Host–gut microbiota interactions shape parasite infections in farmed Atlantic salmon by Jaelle C. Brealey, Miyako Kodama, Jacob A. Rasmussen, Søren B. Hansen, Luisa Santos-Bay, Laurène A. Lecaudey, Martin Hansen, Even Fjære, Lene S. Myrmel, Lise Madsen, Annette Bernhard, Harald Sveier, Karsten Kristiansen, M. Thomas P. Gilbert, Michael D. Martin, Morten T. Limborg

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A zebrafish model to elucidate the impact of host genes on the microbiota by Eiríkur Andri Thormar, Jacob Agerbo Rasmussen, Heidi Mathiessen, Moonika Haahr Marana, Cecilie Grønlund Clausen, Martin Hansen, Miyako Kodama, Louise vonGersdorff Jørgensen, Morten Tønsberg Limborg

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Short reads from honey bee (Apis sp.) sequencing projects reflect microbial associate diversity by Michael Gerth, Gregory D.D. Hurst

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Toward a Symbiotic Perspective on Public Health: Recognizing the Ambivalence of Microbes in the Anthropocene by Salla Sariola, Scott F. Gilbert

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Reconstitution and Transmission of Gut Microbiomes and Their Genes between Generations by Eugene Rosenberg, Ilana Zilber-Rosenberg

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Fungal Host Affects Photosynthesis in a Lichen Holobiont by Meike Schulz, Imke Schmitt, Daniel Weber, Francesco Dal Grande

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Interspecies Communication in Holobionts by Non-Coding RNA Exchange by Ana Lúcia Leitão, Marina C. Costa, André F. Gabriel, Francisco J. Enguita

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