Improving cluster detection of functional microarray data using principal component analysis and clustering approach / by Nies, Hui Wen, author, Mohd. Saberi Mohamad, supervisor, Fakulti Komputeran

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Correction: Microarray Data Reveal Relationship between Jag1 and Ddr1 in Mouse Liver

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Autoantibody profiling on human proteome microarray for biomarker discovery in cerebrospinal fluid and sera of neuropsychiatric lupus. by Chaojun Hu, Wei Huang, Hua Chen, Guang Song, Ping Li, Qiang Shan, Xuan Zhang, Fengchun Zhang, Heng Zhu, Lin Wu, Yongzhe Li

“…We used a human proteome microarray with~17,000 unique full-length human proteins to investigate autoantibodies associated with NPSLE. …”
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Array2BIO: from microarray expression data to functional annotation of co-regulated genes by Rasley Amy, Mabery Shalini, Chain Patrick SG, Loots Gabriela G, Garcia Emilio, Ovcharenko Ivan

“…<p>Abstract</p> <p>Background</p> <p>There are several isolated tools for partial analysis of microarray expression data. To provide an integrative, easy-to-use and automated toolkit for the analysis of Affymetrix microarray expression data we have developed Array2BIO, an application that couples several analytical methods into a single web based utility.…”
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Validation of MIMGO: a method to identify differentially expressed GO terms in a microarray dataset by Yamada Yoichi, Sawada Hiroki, Hirotani Ken-ichi, Oshima Masanobu, Satou Kenji

“…<p>Abstract</p> <p>Background</p> <p>We previously proposed an algorithm for the identification of GO terms that commonly annotate genes whose expression is upregulated or downregulated in some microarray data compared with in other microarray data. …”
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DNA microarray chip assay in new use: early diagnostic value in cutaneous mycobacterial infection by Qian Yu, Yuanyuan Wang, Zhiqin Gao, Hong Yang, Siyu Liu, Jingwen Tan, Lianjuan Yang

Subjects: “…DNA microarray chip…”
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THE VALIDATION OF THE RESULTS OF MICROARRAY STUDIES OF ASSOCIATION BETWEEN GENE POLYMORPHISMS AND THE FREQUENCY OF RADIATION EXPOSURE MARKERS by M. V. Khalyuzova, N. V. Litvyakov, A. E. Sazonov, Ye. N. Albakh, D. S. Isubakova, A. B. Karpov, R. M. Takhauov

“…These polymorphisms have been identified previously during own microarray studies. It has been shown an association with the frequency of dicentric and ring chromosomes induced by radiation exposure. …”
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Production of DNA microarray and expression analysis of genes from Xylella fastidiosa in different culture media by Regiane de Fátima Travensolo, Maria Vitória Cecchette Gottardi Costa, Lucia Maria Carareto-Alves, Emanuel Carrilho, Eliana Gertrudes de Macedo Lemos

Subjects: “…DNA Microarray…”
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Evaluation of a gene information summarization system by users during the analysis process of microarray datasets by Cohen Aaron, Yang Jianji, Hersh William

“…<p>Abstract</p> <p>Background</p> <p>Summarization of gene information in the literature has the potential to help genomics researchers translate basic research into clinical benefits. Gene expression microarrays have been used to study biomarkers for disease and discover novel types of therapeutics and the task of finding information in journal articles on sets of genes is common for translational researchers working with microarray data. …”

Exploration of the radiosensitivity-related prognostic risk signature in patients with glioma: evidence from microarray data by Xiaonan Zhang, Qiannan Ren, Zhiyong Li, Xiaolin Xia, Wan Zhang, Yue Qin, Dehua Wu, Chen Ren

“…Methods Radio-sensitive and radio-resistant glioma cell lines (M059J and M059K) were subjected to microarray analysis to screen for differentially expressed mRNAs. …”
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High-throughput analysis of tissue microarrays using automated desorption electrospray ionization mass spectrometry by Nicolás M. Morato, Hannah Marie Brown, Diogo Garcia, Erik H. Middlebrooks, Mark Jentoft, Kaisorn Chaichana, Alfredo Quiñones-Hinojosa, R. Graham Cooks

“…Abstract Tissue microarrays (TMAs) are commonly used for the rapid analysis of large numbers of tissue samples, often in morphological assessments but increasingly in spectroscopic analysis, where specific molecular markers are targeted via immunostaining. …”
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Pro-MAP: a robust pipeline for the pre-processing of single channel protein microarray data by Metoboroghene Oluwaseyi Mowoe, Shaun Garnett, Katherine Lennard, Jade Talbot, Paul Townsend, Eduard Jonas, Jonathan Michael Blackburn

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Analysing breast cancer microarrays from African Americans using shrinkage-based discriminant analysis by Pang Herbert, Ebisu Keita, Watanabe Emi, Sue Laura Y, Tong Tiejun

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DNA methylation microarray analysis of adult gliomas: A pilot study at Groote Schuur Hospital by Brendon Price

Subjects: “…methylation microarray…”
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Improving CNV Detection Performance in Microarray Data Using a Machine Learning-Based Approach by Chul Jun Goh, Hyuk-Jung Kwon, Yoonhee Kim, Seunghee Jung, Jiwoo Park, Isaac Kise Lee, Bo-Ram Park, Myeong-Ji Kim, Min-Jeong Kim, Min-Seob Lee

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Microarray karyotyping of commercial wine yeast strains reveals shared, as well as unique, genomic signatures by Levine R Paul, Dunn Barbara, Sherlock Gavin

“…</p> <p>Conclusion</p> <p>Microarray karyotyping is a useful tool for analyzing the genome structures of wine yeasts. …”
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PreP+07: improvements of a user friendly tool to preprocess and analyse microarray data by Claros M Gonzalo, Muñoz-Merida Antonio, Martin-Requena Victoria, Trelles Oswaldo

“…<p>Abstract</p> <p>Background</p> <p>Nowadays, microarray gene expression analysis is a widely used technology that scientists handle but whose final interpretation usually requires the participation of a specialist. …”
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A Protein Microarray-Based Respiratory Viral Antigen Testing Platform for COVID-19 Surveillance by Sungjun Beck, Rie Nakajima, Algis Jasinskas, Timothy J. Abram, Sun Jin Kim, Nader Bigdeli, Delia F. Tifrea, Jenny Hernandez-Davies, D. Huw Davies, Per Niklas Hedde, Philip L. Felgner, Weian Zhao

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Utility of the pooling approach as applied to whole genome association scans with high-density Affymetrix microarrays by Gray Joanna, Gunasinghe Cerisse, Korszun Ania, Elkin Amanda, Schalkwyk Leonard C, Cohen-Woods Sarah, Gaysina Darya, Pirlo Katrina, Schosser Alexandra, Jones Lisa, Meaburn Emma, Farmer Anne E, Craig Ian W, McGuffin Peter

“…<p>Abstract</p> <p>Background</p> <p>We report an attempt to extend the previously successful approach of combining SNP (single nucleotide polymorphism) microarrays and DNA pooling (SNP-MaP) employing high-density microarrays. …”
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Role of Serum Inflammatory Cytokines in Sepsis Rats Following BMSCs Transplantation: Protein Microarray Analysis by Guanghui Xiu, Xiuling Li, Juan Chen, Jintao Li, Kun Chen, Ping Liu, Bin Ling, Ying Yang

“…However, after BMSCs treatment, there was improvement in organ functions, histopathological injuries, and survival rates. Protein microarray analysis revealed significant changes in the expression of 12 out of 34 inflammatory cytokines. …”
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