Signature-tagged mutagenesis: barcoding mutants for genome-wide screens. by Mazurkiewicz, P, Tang, C, Boone, C, Holden, D

“…By combining whole-genome microarrays and comprehensive ordered libraries of mutants, high-throughput functional screens can now be achieved on a genomic scale.…”

Understanding non-coding DNA regions in yeast. by Schlackow, M, Gullerova, M

“…In the present review, we discuss advantages and limitations of recently developed sequencing techniques, such as ESTs, DNA microarrays, RNA-Seq (RNA sequencing), DRS (direct RNA sequencing) and TIF-Seq (transcript isoform sequencing). …”

Altered expression of glycan patterns and glycan-related genes in the medial prefrontal cortex of the valproic acid rat model of autism by Yingxun Liu, Yingxun Liu, Yingxun Liu, Yuanyuan Di, Qi Zheng, Zhaoqiang Qian, Juan Fan, Juan Fan, Wei Ren, Zhaoming Wei, Zhaoming Wei, Yingfang Tian, Yingfang Tian

“…Following confirmation of reduced sociability and increased self-grooming behaviors in VPA-treated offspring, we analyzed the alterations in the expression profile of glycan patterns and glycan-related genes by lectin microarrays and RNA-seq, respectively. Lectin microarrays detected 14 significantly regulated lectins in VPA rats, with an up-regulation of high-mannose with antennary and down-regulation of Siaα2-3 Gal/GalNAc. …”
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DOG1 as a novel antibody-drug conjugate target for the treatment of multiple gastrointestinal tumors and liver metastasis by Yangping Wu, Wenting Li, Xiangzheng Chen, Haichuan Wang, Siyuan Su, Ying Xu, Xiangbing Deng, Tinghan Yang, Mingtian Wei, Li Li, Yixin Liu, Jinliang Yang, Weimin Li

“…The DOG1 expression profile was determined among TCGA samples and tissue microarrays. High levels of DOG1 expression were ubiquitously observed in multiple cancer samples from the alimentary tract determined by TCGA samples and tissue microarrays. …”
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Increases prognostic value of clinical-pathological nomogram in patients with esophageal squamous cell carcinoma by Jing Feng Hu, Jing Feng Hu, Xin Song, Xin Song, Kan Zhong, Kan Zhong, Xue Ke Zhao, Xue Ke Zhao, Fu You Zhou, Rui Hua Xu, Rui Hua Xu, Ji Lin Li, Xian Zeng Wang, Xue Min Li, Pan Pan Wang, Pan Pan Wang, Ling Ling Lei, Ling Ling Lei, Meng Xia Wei, Meng Xia Wei, Ran Wang, Ran Wang, Zong Min Fan, Zong Min Fan, Xue Na Han, Xue Na Han, Yao Chen, Yao Chen, Liu Yu Li, Liu Yu Li, Jia Jia Ji, Jia Jia Ji, Yuan Ze Yang, Yuan Ze Yang, Bei Li, Bei Li, Miao Miao Yang, Miao Miao Yang, Hai Jun Yang, Fu Bao Chang, Jing Li Ren, Sheng Li Zhou, Li Dong Wang, Li Dong Wang

“…Subsequently, the tumor tissues of all patients were prepared into tissue microarrays. AIPATHWELL software was employed to explore tissue microarrays and calculate the tumor-stroma ratio. …”
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Multiple-model machine learning identifies potential functional genes in dilated cardiomyopathy by Lin Zhang, Yexiang Lin, Kaiyue Wang, Lifeng Han, Xue Zhang, Xiumei Gao, Zheng Li, Houliang Zhang, Jiashun Zhou, Heshui Yu, Xuebin Fu, Xuebin Fu

“…We aim to develop a novel overall normalized sum weight of multiple-model MLs to assess the diagnosing value in DCM.MethodsGene expression data were selected from previously published databases (six sets of eligible microarrays, 386 samples) with eligible criteria. Two sets of microarrays were used as training; the others were studied in the testing sets (ratio 5:1). …”
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An application of the Shapley value to the analysis of co-expression networks by Giulia Cesari, Encarnación Algaba, Stefano Moretti, Juan A. Nepomuceno

“…An application of the method to the analysis of gene expression data from microarrays is presented, as well as a comparison with classical centrality indices. …”
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The Critical Role of Pharmacists in the Clinical Delivery of Pharmacogenetics in the U.S by Susanne B. Haga

“…Since the rebirth of pharmacogenomics (PGx) in the 1990s and 2000s, with new discoveries of genetic variation underlying adverse drug response and new analytical technologies such as sequencing and microarrays, there has been much interest in the clinical application of PGx testing. …”
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Application of personalised medicine to solid tumours: opportunities and challenges by Christian Ruiz, Markus Tolnay, Lukas Bubendorf

“…The technological advances in the last few years, such as the development of high resolution DNA microarrays or second generation sequencers, have led to a dramatic increase in the number of ongoing genomic profiling studies. …”
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Bioinformatics analysis of estrogen-responsive genes by Handel, A

“…Identification of estrogen target genes is greatly facilitated by the use of transcriptomic methods, such as RNA-seq and expression microarrays, and chromatin immunoprecipitation with massively parallel sequencing (ChIP-seq). …”

Ovarian Transcriptomic Analysis Reveals Differential Expression Genes Associated with Cell Death Process after Selection for Ovulation Rate in Rabbits by Marta Serna-García, Rosa Peiró, Eva Serna, María Antonia Santacreu

“…A transcriptomic study was performed, using microarrays, in ovarian tissue from females belonging to the selected line and the control line. …”
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The Innate Immune-Related Genes in Catfish by Weidong Liu, Xianggang Gao, Yunfeng Li, Hao Su, Xueguang Liu, Chongbo He, Lei Gao

“…This review summarizes the current understanding of innate immune-related genes in catfish, including pattern recognition receptors, antimicrobial peptides, complements, lectins, cytokines, transferrin and gene expression profiling using microarrays and next generation sequencing technologies. …”
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Approach to Thrombophilia in Pregnancy—A Narrative Review by Miruna Samfireag, Cristina Potre, Ovidiu Potre, Raluca Tudor, Teodora Hoinoiu, Andrei Anghel

“…Genetic testing for thrombophilic gene mutations is evaluated using different methodologies of real-time polymerase chain reaction and DNA microarrays of specific genes. Adapting the general care of the pregnant woman to the particularities caused by thrombophilia is an important component, so screening is preferred to assess the degree of genetic damage that manifests itself as a risk of thrombosis. …”
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Feature selection in bioinformatics by Wang, Lipo.

“…For example, there are millions of single nucleotide polymorphisms (SNPs) that are genetic variations which determine the dierence between any two unrelated individuals. In microarrays, thousands of genes can be proled in each test. …”
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Long non-coding RNA-SNHG7 acts as a target of miR-34a to increase GALNT7 level and regulate PI3K/Akt/mTOR pathway in colorectal cancer progression by Yang Li, Changqian Zeng, Jialei Hu, Yue Pan, Yujia Shan, Bing Liu, Li Jia

“…Results SNHG7 expression showed a high fold (SW620/SW480) in CRC microarrays. The CRC patients with high expression of SNHG7 had a significantly poor prognosis. …”
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Programmed Death Ligand 1 (PD-L1) Expression in Malignant Mesenchymal Tumors by Kemal KÖSEMEHMETOĞLU, Ece ÖZOĞUL, Berrin BABAOĞLU, Gaye GÜLER TEZEL, Gökhan GEDİKOĞLU

“…Material and Method: Tissue microarrays of 3-4 mm diameter were composed from paraffin blocks of 222 various sarcomas. …”
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Mof-associated complexes have overlapping and unique roles in regulating pluripotency in embryonic stem cells and during differentiation by Sarina Ravens, Marjorie Fournier, Tao Ye, Matthieu Stierle, Doulaye Dembele, Virginie Chavant, Làszlò Tora

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Synergies of Radiomics and Transcriptomics in Lung Cancer Diagnosis: A Pilot Study by Aikaterini Dovrou, Ekaterini Bei, Stelios Sfakianakis, Kostas Marias, Nickolas Papanikolaou, Michalis Zervakis

“…For each patient, 749 Computed Tomography (CT) radiomic features were extracted and the corresponding transcriptomics data were provided through DNA microarrays. The radiomic features were clustered using the iterative K-means algorithm resulting in 77 homogeneous clusters, represented by meta-radiomic features. …”
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Identification of the miRNAome in human fracture callus and nonunion tissues by Michael Hadjiargyrou, Leonidas Salichos, Peter Kloen

“…Also, miRNAs were isolated and screened using microarrays followed by bioinformatic analyses, including, differential expression, pathways and biological processes, as well as elucidation of target genes. …”
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PD-L1 expression on stromal tumor-infiltrating lymphocytes is a favorable prognostic factor in ovarian serous carcinoma by Ki Hyung Kim, Kyung Un Choi, Ahrong Kim, So Jung Lee, Jung Hee Lee, Dong Soo Suh, Byung-su Kwon, Chungsu Hwang

“…Methods Tissue microarrays were constructed from ovarian epithelial cancer tissues of 248 patients and PD-L1 immunostaining was performed using the SP263 clone. …”
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