Micro- and Nanoengineering Approaches to Control Stem Cell-Biomaterial Interactions by Dolatshahi-Pirouz, Alireza, Nikkhah, Mehdi, Kolind, Kristian, Dokmeci, Mehmet R., Khademhosseini, Alireza

“…Keywords: micro- and nanotopography; microwells; microarrays; embryonic and adult stem cells; stem cell therapy…”
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Multicolor lasing prints by Ta, Van Duong, Yang, Shancheng, Wang, Yue, Gao, Yuan, He, Tingchao, Chen, Rui, Demir, Hilmi Volkan, Sun, Handong

“…This work demonstrates mass production of printable multi-color lasing microarrays based on uniform hemispherical microcavities on a distributed Bragg reflector using inkjet technique. …”
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MicroRNA signatures differentiate types, grades, and stages of breast invasive ductal carcinoma (IDC): miRNA-target interacting signaling pathways by Vinod Kumar Verma, Syed Sultan Beevi, Rekha A. Nair, Aviral Kumar, Ravi Kiran, Liza Esther Alexander, Lekha Dinesh Kumar

“…Similar profiling was carried out in Brca2/p53 double knock out mice models using rodent miRNA microarrays that revealed common signatures with human arrays which could be used for future in vivo functional validation. …”
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Intercellular communication involving macrophages at the maternal-fetal interface may be a pivotal mechanism of URSA: a novel discovery from transcriptomic data by Xiaoxuan Zhao, Yuepeng Jiang, Shiling Luo, Yang Zhao, Hongli Zhao

“…This study aimed to explore the potential molecule mechanism that may be involved in the communication between Mφ and DSC or trophoblast cells and determine their diagnostic characteristics by using the integrated research strategy of bioinformatics analysis, machine learning and experiments. First, microarrays of decidual tissue (GSE26787, GSE165004) and placenta tissue (GSE22490) in patients with URSA, as well as microarrays involving induced decidualization (GSE94644) and macrophage polarization in vitro (GSE30595) were derived from the gene expression omnibus (GEO) database. …”
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The genomic landscape of rare disorders in the Middle East by Maha El Naofal, Sathishkumar Ramaswamy, Ali Alsarhan, Ahmed Nugud, Fatima Sarfraz, Hiba Janbaz, Alan Taylor, Ruchi Jain, Nour Halabi, Sawsan Yaslam, Roudha Alfalasi, Shruti Shenbagam, Fatma Rabea, Martin Bitzan, Lemis Yavuz, Deena Wafadari, Hamda Abulhoul, Shiva Shankar, Munira Al Maazmi, Ruba Rizk, Zeinab Alloub, Haitham Elbashir, Mohamed O. E. Babiker, Nidheesh Chencheri, Ammar AlBanna, Meshal Sultan, Mohamed El Bitar, Safeena Kherani, Nandu Thalange, Sattar Alshryda, Roberto Di Donato, Christos Tzivinikos, Ibrar Majid, Alexandra F. Freeman, Corina Gonzalez, Arif O. Khan, Hisham Hamdan, Walid Abuhammour, Mohamed AlAwadhi, Abdulla AlKhayat, Alawi Alsheikh-Ali, Ahmad N. Abou Tayoun

“…Clinical genomic investigations included exome-based sequencing, chromosomal microarrays, and/or targeted testing. We assessed the diagnostic yield and implications for clinical management among this population. …”
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Comparison of multiplex meta analysis techniques for understanding the acute rejection of solid organ transplants by Khatri Purvesh, Morgan Alexander A, Jones Richard, Sarwal Minnie M, Butte Atul J

“…<p>Abstract</p> <p>Background</p> <p>Combining the results of studies using highly parallelized measurements of gene expression such as microarrays and RNAseq offer unique challenges in meta analysis. …”
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Meta-Statistics for Variable Selection: The R Package BioMark by Ron Wehrens, Pietro Franceschi

“…With the advent of measurement methodologies based on microarrays and mass spectrometry, thousands of variables are routinely being measured on complex biological samples. …”
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Regulatory T lymphocytes are associated with less aggressive histologic features in microsatellite-unstable colorectal cancers. by David Tougeron, Pauline Maby, Nicolas Elie, Emilie Fauquembergue, Florence Le Pessot, Marie Cornic, Jean-Christophe Sabourin, Pierre Michel, Thierry Frébourg, Jean-Baptiste Latouche

“…PATIENTS AND METHODS: Using tissue microarrays, T-cell sub-population infiltration, including T cells (CD3), cytotoxic T cells (CD8) and regulatory T cells (FoxP3) were studied in 86 MSI CRCs. …”
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Advances in the methods of detection of plant viruses and bacteria (abstract only) by M. Cambra, M.M. López, M.T. Gorris, P. Llop, E. Bertolini, A. Olmos

“…The general tendency is the use of techniques combining serological-molecular or molecular-serological methods for simultaneous detection of different pathogens in one assay, as multiplex-PCR with colorimetric detection of amplicons and the DNA chips or microarrays.…”
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Chromosomal Heteromorphisms and Cancer Susceptibility Revisited by Thomas Liehr

“…This heightened focus may only be achieved by approaches other than standard sequencing or chromosomal microarrays, as these techniques are at a minimum impaired in their ability to detect, if not blind to, (highly) repetitive DNA sequences.…”
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A Review on Initialization Methods for Nonnegative Matrix Factorization: Towards Omics Data Experiments by Flavia Esposito

“…This paper aims to present the state-of-the-art on NMF initialization schemes along with some initial considerations on the impact of initialization methods when microarrays (a simple instance of omic data) are evaluated with NMF mechanisms. …”
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Liquid-biopsy based Multi-Omics Technologies ready to be used in Psychoimmunology by Ulrike Kegler, Manuela Hofner, Silvia Schönthaler, Walter Pulverer, Andreas Weinhäusel, Klemens Vierlinger, Christa Nöhammer

“…Rather, interactions between genes, transcripts, proteins, metabolites, and the environment determine the development and trajectory of complex diseases which not least include psychiatric disorders.Along these lines we will introduce the manifold omics workflows established in our research group which are all based on multiplex high throughput technologies (DNA &amp; protein microarrays, Next generation sequencing, Luminex bead technology and microfluidic qPCR) and enable the analysis of a whole range of different biomolecules [DNA (methylation), mRNA, small RNAs, proteins, antibodies]. …”
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Buffering of segmental and chromosomal aneuploidies in Drosophila melanogaster. by Per Stenberg, Lina E Lundberg, Anna-Mia Johansson, Patrik Rydén, Malin J Svensson, Jan Larsson

“…Therefore, to explore these effects, we examined expression patterns of genes in several Drosophila deficiency hemizygotes and a duplication hemizygote using microarrays. The results indicate that genes expressed in deficiency hemizygotes are significantly buffered, and that the buffering effect is general rather than being mainly mediated by feedback regulation of individual genes. …”
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Predictive Factors of the Response of Rectal Cancer to Neoadjuvant Radiochemotherapy by Anita De Rossi, Donato Nitti, Roberta Bertorelle, Gaya Spolverato, Salvatore Pucciarelli

“…Gene expression profiles of thousands of genes using microarrays, microRNA studies and the search for new circulating molecules, such as human telomerase reverse transcriptase mRNA and cell-free DNA, are providing interesting results that might lead to the identification of new useful biomarkers. …”
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Microbiological and Molecular Diagnosis of Mucormycosis: From Old to New by Nina Lackner, Wilfried Posch, Cornelia Lass-Flörl

“…Further, DNA-based methods include microarrays and PCR-ESI-MS. However, general laboratory standards are still in development, meaning that molecular methods are currently limited to add-on analytics to culture and microscopy.…”
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Microfabrication of thin film based microelectrodes by Chai, Jun Ping

“…Striped and circular shaped microarrays were fabricated on the NDLC film electrodes by mean of photolithography. …”
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IRF5:RelA interaction targets inflammatory genes in macrophages. by Saliba, D, Heger, A, Eames, H, Oikonomopoulos, S, Teixeira, A, Blazek, K, Androulidaki, A, Wong, D, Goh, F, Weiss, M, Byrne, A, Pasparakis, M, Ragoussis, J, Udalova, I

“…Analysis of protein:DNA microarrays demonstrates that IRF5 recognizes the canonical IRF-binding (interferon-stimulated response element [ISRE]) motif in vitro. …”

Challenge of investigating biologically relevant functions of virulence factors in bacterial pathogens. by Moxon, R, Tang, C

“…Recent innovations have increased enormously the opportunities for investigating the molecular basis of bacterial pathogenicity, including the availability of whole-genome sequences, techniques for identifying key virulence genes, and the use of microarrays and proteomics. These methods should provide powerful tools for analysing the patterns of gene expression and function required for investigating host-microbe interactions in vivo. …”

Functional genomic approaches to understanding abscission activation in citrus by Tadeo, F, Agustí, J, Merelo, P, Cercós, M, Terol, J, Domingo, C, Talón, M

“…These include: (a) the development of an expressed sequence tag (EST) dataset from abscission activated AZs and the analysis of ESTs distribution in organs to reveal AZ-preferential gene expression during abscission activation, (b) comparative transcriptomic analysis using cDNA microarrays and laser microdissected tissues (AZ cells, petiole and fruit rind cells flanking AZs), and (c) functional characterization of putative abscission-associated citrus genes in Arabidopsis thaliana and rice (Oryza sativa).…”

Gene expression profiling studies on Caenorhabditis elegans dystrophin mutants dys-1(cx-35) and dys-1(cx18). by Towers, P, Lescure, P, Baban, D, Malek, J, Duarte, J, Jones, E, Davies, K, Ségalat, L, Sattelle, D

“…Such mutants offer potentially valuable worm models of human Duchenne muscular dystrophy. We have used microarrays to examine genes expressed differentially between wild-type C. elegans and dys-1 mutants. …”