A Bayesian variable selection procedure to rank overlapping gene sets by Skarman Axel, Shariati Mohammad, Jans Luc, Jiang Li, Sørensen Peter

“…<p>Abstract</p> <p>Background</p> <p>Genome-wide expression profiling using microarrays or sequence-based technologies allows us to identify genes and genetic pathways whose expression patterns influence complex traits. …”
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Functional immune-genomics of severe mental illness by Bernhard T. Baune

“…Results of screening of individuals with psychotic disorder using planar protein microarrays containing 42,100 human antigens representing 18,914 proteins will be presented. …”
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RRM2 expression in different molecular subtypes of breast cancer and its prognostic significance by Manar Ahmed Abdel-Rahman, Mena Mahfouz, Hany Onsy Habashy

“…Material and methods This study was performed by investigating RRM2 protein expression in breast cancer and correlating the results with other clinicopathological variables using immunohistochemistry and tissue microarrays. Results About 77% of cases were RRM2 positive. …”
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Expression of Calretinin, Marker of Mesothelial Differentiation, in Pancreatic Ductal Adenocarcinoma: A Potential Diagnostic Pitfall by Gokce ASKAN, Olca BASTURK

“…Materials and Methods: Calretinin immunohistochemical staining was performed on the tissue microarrays (TMAs), which were created using three 0.6 mm diameter punches per tumor (n=113). …”
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The HP0256 gene product is involved in motility and cell envelope architecture of <it>Helicobacter pylori</it> by Penn Charles W, Moore Stanley A, Caly Delphine L, Lane Michael C, Ryan Kieran A, Douillard François P, Hinds Jason, O'Toole Paul W

“…Interestingly, whole genome microarrays of an HP0256 mutant revealed transcriptional changes in a number of genes associated with the flagellar regulon and the cell envelope, such as outer membrane proteins and adhesins. …”
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Classical, Molecular, and Genomic Cytogenetics of the Pig, a Clinical Perspective by Brendan Donaldson, Daniel A. F. Villagomez, W. Allan King

“…The next-generation of clinical cytogenetics include the implementation of DNA microarrays, and next-generation sequencing (NGS) technologies such as DNA sequencing to better explore tentative genome architecture changes. …”
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Self-similar cuspidal formation by runaway thermocapillary forces in thin liquid films by Chengzhe Zhou, Sandra M Troian

“…More practically, the system examined here introduces a potentially novel lithographic method for one-step non-contact fabrication of cuspidal microarrays.…”
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Whole transcriptome RNA-Seq analysis of breast cancer recurrence risk using formalin-fixed paraffin-embedded tumor tissue. by Dominick Sinicropi, Kunbin Qu, Francois Collin, Michael Crager, Mei-Lan Liu, Robert J Pelham, Mylan Pho, Andrew Dei Rossi, Jennie Jeong, Aaron Scott, Ranjana Ambannavar, Christina Zheng, Raul Mena, Jose Esteban, James Stephans, John Morlan, Joffre Baker

“…These methods both enable rediscovery of RNA biomarkers for disease recurrence risk that were previously identified by RT-PCR analysis of a cohort of 136 patients, and also identify a high percentage of recurrence risk markers that were previously discovered using DNA microarrays in a separate cohort of patients, evidence that this RNA-Seq technology has sufficient precision and sensitivity for biomarker discovery. …”
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Temporal transcriptomic response during arsenic stress in <it>Herminiimonas arsenicoxydans</it> by Arsène-Ploetze Florence, Coppee Jean-Yves, Dillies Marie-Agnès, Proux Caroline, Fardeau Marie-Laure, Koechler Sandrine, Cleiss-Arnold Jessica, Bertin Philippe N

“…</p> <p>Results</p> <p>Microarrays were designed to compare gene transcription profiles under a temporal As(III) exposure. …”
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Toward functional profiling for eDNA‐based monitoring in coastal environments: A comparison of three approaches by Ion L. Abad‐Recio, Laura Alonso‐Sáez, Anders Lanzén

“…The methodologies included inference from 16S metabarcoding data using Tax4Fun, GeoChip microarrays, and shotgun metagenomics. Results revealed significant functional diversity across all sampling sites, irrespective of their environmental status. …”
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Expression of Amine Oxidase Proteins in Adrenal Cortical Neoplasm and Pheochromocytoma by Eun Kyung Kim, Ja Seung Koo

“…We delved into the expression of amine oxidase family proteins and their potential significance in adrenal gland neoplasm. Tissue microarrays were prepared for 132 cases of adrenal cortical neoplasm (ACN) consisting of 115 cases of adrenal cortical adenoma (ACA), 17 cases of adrenal cortical carcinoma (ACC), and 163 cases of pheochromocytoma (PCC). …”
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Getting everyone to agree on gene signatures for murine macrophage polarization in vitro. by Giorgia Colombo, Emanuela Pessolano, Maria Talmon, Armando A Genazzani, Paolo Kunderfranco

“…RNA sequencing (RNA-Seq) has revolutionized molecular biology, offering a comprehensive view of transcriptomes. Unlike microarrays, RNA-Seq detects known and novel transcripts, alternative splicing, and rare transcripts, providing a deeper understanding of genome complexity. …”
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Multiplexed smFRET Nucleic Acid Sensing Using DNA Nanotweezers by Anisa Kaur, Roaa Mahmoud, Anoja Megalathan, Sydney Pettit, Soma Dhakal

“…Although significant efforts have been made to develop more sensitive and rapid multiplexed screening methods, such as microarrays and electrochemical sensors, their limitations include their intricate sensing designs and semi-quantitative detection capabilities. …”
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A genome-wide analysis reveals that the <it>Drosophila </it>transcription factor Lola promotes axon growth in part by suppressing expression of the actin nucleation factor Spire by Gates Michael A, Kannan Ramakrishnan, Giniger Edward

“…</p> <p>Results</p> <p>We use expression microarrays to identify the <it>lola</it>-dependent transcriptome in the <it>Drosophila </it>embryo. …”
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Exploring the Roles of lncRNAs in GBM Pathophysiology and Their Therapeutic Potential by Christian T. Stackhouse, G. Yancey Gillespie, Christopher D. Willey

“…The increased accessibility of next generation sequencing technologies and the advent of lncRNA-specific microarrays have facilitated the study of lncRNA etiology. …”
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Quantification and signaling of alternatively spliced GFRα2 isoforms by Too, Heng-Phon, Fung, Winnie Kar Yee

“…Transcriptional profiling with DNA microarrays demonstrated that the spliced isoforms do not share similar profiles. …”
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Study of tumor-associated macrophages in triple-negative breast cancer and their correlation with clinicopathological parameters by Priyalatha Kurusamy

“…The expression levels of TAMs in both stromal (CD68S) and tumor nest (CD68T) regions were evaluated by performing immunohistochemistry using CD68 biomarker in tissue microarrays with tumors from 183 TNBC cancer cases. …”
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PIM kinases are progression markers and emerging therapeutic targets in diffuse large B-cell lymphoma. by Brault, L, Menter, T, Obermann, E, Knapp, S, Thommen, S, Schwaller, J, Tzankov, A

“…METHODS: Immunohistochemical staining for PIM kinases and CXCR4 was performed on tissue microarrays from a cohort of 101 DLBCL cases, and the effects of PIM inhibitors on the survival and migration of DLBCL cell lines were determined. …”

Isolation and characterization of human adipocyte-derived extracellular vesicles using filtration and ultracentrifugation by Akbar, N, Pinnick, K, Paget, D, Choudhury, R

“…Isolated EVs from this protocol can be used for downstream analysis, including transmission electron microscopy, proteomics, metabolomics, small RNA-sequencing, microarrays and can be utilized in functional in vitro/in vivo studies.…”

Multivalent recombinant proteins for probing functions of leucocyte surface proteins such as the CD200 receptor by Voulgaraki, D, Mitnacht-Kraus, R, Letarte, M, Foster-Cuevas, M, Brown, M, Barclay, A

“…The CD200-COMP gave strong signals in protein microarrays, suggesting that such reagents may be valuable in high throughput detection of weak interactions. © 2005 Blackwell Publishing Ltd.…”