Whole genome transcription profiling of <it>Anaplasma phagocytophilum </it>in human and tick host cells by tiling array analysis by Chavez Adela, Grindle Suzanne M, Schloeder Brian R, Felsheim Roderick F, Herron Michael J, Nelson Curtis M, Kurtti Timothy J, Munderloh Ulrike G

“…Understanding the biology behind such versatile cellular parasitism may be derived through the use of tiling microarrays to establish high resolution, genome-wide transcription profiles of the organism as it infects cell lines representative of its life cycle (tick; ISE6) and pathogenesis (human; HL-60 and HMEC-1).…”
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Bioeffects of silver nanoparticles (AgNPs) synthesized by producer of biosurfactant Bacillus subtilis strain: in vitro cytotoxicity, antioxidant properties and metabolic activities... by Joanna Małgorzata Chojniak-Gronek, Łukasz Jałowiecki, Grażyna Anna Płaza

“…In our experiment, microarrays PM-M1–PM-M4 were used to evaluate the growth of NHDF fibroblast cells in the presence of bio-AgNPs and chem-AgNPs. …”
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Live-Cell Systems in Real-Time Biomonitoring of Water Pollution: Practical Considerations and Future Perspectives by Donald Wlodkowic, Tomasz M. Karpiński

“…Recent advances in recombinant microorganisms, cell immobilisation techniques, live-cell microarrays and microfluidic Lab-on-a-Chip technologies open new avenues to develop miniaturised systems capable of detecting a broad range of water contaminants. …”
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The Value of MicroRNAs as an Indicator of the Severity and the Acute Phase of Spinal Cord Injury by Junyoung Park, Dongsoo Yi, Jiyoon Jang, Jiseon Hong

“…After the behavioral test, RNA isolation, microRNA expression profiling using microarrays and quantitative polymerase chain reaction, measurements were compared between the three groups. …”
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Development of endosperm transfer cells in barley by Johannes eThiel

“…Transcriptome analysis of ETCs at different developmental stages by microarrays indicated activated gene expression programs related to control of cell proliferation and cell shape, cell wall and carbohydrate metabolism reflecting the morphological changes during early ETC development. …”
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Expression capable library for studies of <it>Neisseria gonorrhoeae</it>, version 1.0 by Wachocki Susi, Prichard Kimberly, Clary Susan, Weyand Nathan J, Howie Heather, Jens Jason, Keller Thomas J, Langford Chris, Potter Laura, Friedrich Alexandra, Mason Roxie M, Du Ying, Altherr Michael R, Brettin Thomas, Sodergren Erica, Dillard Joseph P, Weinstock George, So Magdalene, Arvidson Cindy

“…PCR amplicons of each ORF used in the cloning reactions were spotted onto glass slides to produce DNA microarrays representing 2035 genes of the gonococcal genome. …”
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Single-neuron RNA-Seq: technical feasibility and reproducibility by Shenfeng eQiu, Shujun eLuo, Oleg eEvgrafov, Robin eLi, Gary P Schroth, Pat eLevitt, James A Knowles, Kai eWang

“…Transcriptome analysis of single neurons has been previously described using gene expression microarrays. Using high-throughput transcriptome sequencing (RNA-Seq), we have developed a method to perform single-neuron RNA-Seq. …”
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Large Scale Molecular Studies of Pituitary Neuroendocrine Tumors: Novel Markers, Mechanisms and Translational Perspectives by Raitis Peculis, Helvijs Niedra, Vita Rovite

“…Recently, PitNETs have been investigated in large scale (exome and genome) molecular analyses (transcriptome microarrays and sequencing), to uncover novel markers. …”
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Artemisinin resistance in <it>Plasmodium falciparum </it>is associated with an altered temporal pattern of transcription by Newton Paul N, Socheat Duong, Russell Bruce, Liong Kek-Yee, Chotivanich Kesinee, Mayxay Mayfong, Yi Poravuth, Ramadoss Ramya, Sim Joan, Mackinnon Margaret J, Imwong Mallika, Mok Sachel, Day Nicholas PJ, White Nicholas J, Preiser Peter R, Nosten François, Dondorp Arjen M, Bozdech Zbynek

“…To identify key features associated with the delayed parasite clearance phenotype, we employed DNA microarrays to profile the physiological gene expression pattern of the resistant isolates.…”
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Molecular signature of cell cycle exit induced in human T lymphoblasts by IL-2 withdrawal by Pfeifer Aleksandra, Jarzab Michal, Oczko-Wojciechowska Malgorzata, Gos Monika, Siwicki Jan, Chechlinska Magdalena, Jarzab Barbara, Steffen Jan

“…</p> <p>Results</p> <p>By the Affymetrix microarrays HG-U133 2.0 Plus, 53 genes were distinguished as differentially expressed before and soon after IL-2 deprivation. …”
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Transcriptomic profiling of central nervous system regions in three species of honey bee during dance communication behavior. by Moushumi Sen Sarma, Sandra L Rodriguez-Zas, Feng Hong, Sheng Zhong, Gene E Robinson

“…BACKGROUND:We conducted a large-scale transcriptomic profiling of selected regions of the central nervous system (CNS) across three species of honey bees, in foragers that were performing dance behavior to communicate to their nestmates the location, direction and profitability of an attractive floral resource. We used microarrays to measure gene expression in bees from Apis mellifera, dorsata and florea, species that share major traits unique to the genus and also show striking differences in biology and dance communication. …”
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Identification of miRNA-103 in the cellular fraction of human peripheral blood as a potential biomarker for malignant mesothelioma--a pilot study. by Daniel G Weber, Georg Johnen, Oleksandr Bryk, Karl-Heinz Jöckel, Thomas Brüning

“…METHODOLOGY/PRINCIPAL FINDINGS:Using oligonucleotide microarrays for biomarker identification the miRNA levels in the cellular fraction of human peripheral blood of mesothelioma patients and asbestos-exposed controls were analyzed. …”
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Study on differences in the pathology, T cell subsets and gene expression in susceptible and non-susceptible hosts infected with Schistosoma japonicum. by Weibin Jiang, Yang Hong, Jinbiao Peng, Zhiqiang Fu, Xingang Feng, Jinming Liu, Yaojun Shi, Jiaojiao Lin

“…In the current study, we compared the differences in pathology by Hematoxylin-eosin staining and in changes in the T cell subsets with flow cytometry as well as gene expression using genome oligonucleotide microarrays in the lung and liver, before challenge and 10 days post-infection with schistosomes in a S. japonicum-susceptible mouse model of infection, a non-susceptible rat model and the non-permissive host, M. fortis. …”
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Small ncRNA Expression-Profiling of Blood from Hemophilia A Patients Identifies miR-1246 as a Potential Regulator of Factor 8 Gene. by Tewarit Sarachana, Neetu Dahiya, Vijaya L Simhadri, Gouri Shankar Pandey, Surbhi Saini, Christine Guelcher, Michael F Guerrera, Chava Kimchi-Sarfaty, Zuben E Sauna, Chintamani D Atreya

“…In this study, global small ncRNA expression profiling analysis of whole blood from HA patients, and controls, was performed using high-throughput ncRNA microarrays. Patients were further sub-divided into those that developed neutralizing-anti-FVIII antibodies (inhibitors) and those that did not. …”
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Potential Tumor Suppressor Role of Polo-like Kinase 5 in Cancer by Shengqin Su, Mary Ann Ndiaye, Glorimar Guzmán-Pérez, Rebecca Michael Baus, Wei Huang, Manish Suresh Patankar, Nihal Ahmad

“…Subsequently, we performed immunohistochemical staining for PLK5 on multiple tissue microarrays followed by Vectra scanning and quantitative inForm analysis. …”
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Expression patterns of microRNAs associated with CML phases and their disease related targets by Trněný Marek, Burda Pavel, Klamová Hana, Lopotová Tereza, Machová Poláková Kateřina, Stopka Tomáš, Moravcová Jana

“…</p> <p>Results</p> <p>Using microarrays we identified differential expression profiles of 49 miRNAs in CML patients at diagnosis, in hematological relapse, therapy failure, blast crisis and major molecular response. …”
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Gene Expression over Time during Cell Transformation Due to Non-Genotoxic Carcinogen Treatment of Bhas 42 Cells by Kiyomi Ohmori, Asuka Kamei, Yuki Watanabe, Keiko Abe

“…Here, we analyzed the gene expression over time, using DNA microarrays, in Bhas 42 cells treated with the tumor-promoting compound 12-<i>O</i>-tetradecanoylphorbol-13-acetate (TPA), and NGTxC, with a total of three repeat experiments. …”
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DeepSAGE reveals genetic variants associated with alternative polyadenylation and expression of coding and non-coding transcripts. by Daria V Zhernakova, Eleonora de Klerk, Harm-Jan Westra, Anastasios Mastrokolias, Shoaib Amini, Yavuz Ariyurek, Rick Jansen, Brenda W Penninx, Jouke J Hottenga, Gonneke Willemsen, Eco J de Geus, Dorret I Boomsma, Jan H Veldink, Leonard H van den Berg, Cisca Wijmenga, Johan T den Dunnen, Gert-Jan B van Ommen, Peter A C 't Hoen, Lude Franke

“…Apart from cis-eQTLs that are typically easily identifiable using microarrays or RNA-sequencing, DeepSAGE also revealed many cis-eQTLs for antisense and other non-coding transcripts, often in genomic regions containing retrotransposon-derived elements. …”
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THE POSSIBLE COLLISIONS IN VIRUS INFECTION IMMUNODIAGNOSTICS AND VACCINATION by E. P. Kharchenko

“…Decreasing and even avoiding risks of complications from vaccination may be feasible by means of a computer analysis of vaccine proteins for the occurrence of epitopes homologous to the human protein those and particularly by an analysis of Ab profiles induced by vaccine using microarrays with the large number of human protein antigens.…”
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HepG2-Based Designer Cells with Heat-Inducible Enhanced Liver Functions by Hiroyuki Kitano, Yoshinori Kawabe, Masamichi Kamihira

“…Comprehensive transcriptome analysis using DNA microarrays revealed that HepG2/8F_HS cells had enhanced overall expression of many liver function-related genes following heat treatment. …”
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