Tissue microarray analysis indicates hedgehog signaling as a potential prognostic factor in intermediate-risk prostate cancer by Gonnissen, A, Isebaert, S, Perneel, C, McKee, C, Verrill, C, Bryant, R, Van Utterbeeck, F, Lerut, E, Haustermans, K, Muschel, R

“…In this retrospective study, we compared the activation status of the Hh signaling pathway between benign and tumor tissue, and evaluated the clinical significance of Hh signaling in PCa.In this tissue microarray (TMA) study, the protein expression of several Hh signaling components and Hh target proteins, along with microvessel density, were compared between benign (n = 64) and malignant (n = 170) prostate tissue, and correlated with PCa clinicopathological characteristics and biochemical recurrence (BCR).The Hh signaling pathway appeared to be more active in PCa than in benign prostate tissue, as demonstrated by lower expression of the negative regulators PTCH1 and GLI3 in the tumor tissue compared to benign. …”

Oligonucleotide microarray analysis of CD34+cells in patients with low risk myelodysplasia and age-matched healthy subjects. by Sternberg, A, Ahmed, M, Johnson, S, Killick, S, Bowen, D, Chapman, C, Vadher, B, Girish, R, Vassilou, G, Freeman, T, Seidl, T, Bruno, L, Vyas, P

CD44v3 levels in primary cutaneous melanoma are predictive of prognosis: assessment by the use of tissue microarray. by Pacifico, MD, Grover, R, Richman, P, Daley, F, Buffa, F, Wilson, G

“…We have applied the novel technology of tissue microarray for the high throughput screening of a cohort of 120 primary cutaneous melanoma specimens for expression of the transmembrane glycoprotein CD44, splice variant 3 (v3), which has previously been implicated in tumor progression. …”

Optimization of cryopreserved single cell suspension of gastric epithelial cells for successful DotScanTM antibody microarray by Asif Sukri, Alfizah Hanafiah, Nik Ritza Kosai Nik Mahmood, Mustafa Mohamed Taher, Isa Mohamed Rose, Ramelah Mohamed

“…DotScanTM antibody microarray employs live cells with satisfactory cell viability for detection of clusters of differentiation (CD) antigens in various diseases. …”
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Identifying protein biomarkers in predicting disease severity of dengue virus infection using immune-related protein microarray by Soe, Hui Jen, Yong, Yean K., Al-Obaidi, Mazen M. Jamil, Samudi, Chandramathi, Gudimella, Ranganath, Manikam, Rishya, Sekaran, Shamala Devi

Cellular metabolic profiling of CrFK cells infected with feline infectious peritonitis virus using phenotype microarrays by Ng, Shing Wei, Selvarajah, Gayathri Thevi, Cheah, Yoke Kqueen, Mustaffa Kamal, Farina, Omar, Abdul Rahman

“…Methods: The internalization of type II FIPV WSU 79-1146 in Crandell-Rees Feline Kidney (CrFK) cells was visualized using a fluorescence microscope, and optimization prior to phenotype microarray (PM) study was performed. Then, four types of Biolog Phenotype MicroArray™ plates (PM-M1 to PM-M4) precoated with different carbon and nitrogen sources were used to determine the metabolic profiles in FIPV-infected cells. …”
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Selecting a smaller subset of informative genes from microarray data via a three-stage method by Mohamad, Mohd. Saberi, Omatu, Sigeru, Deris, Safaai, YoshiokaI, Michifuci

“…Microarray data produced by microarray are useful for cancer classification. …”
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Pathway-based microarray analysis for defining statistical significant phenotype-related pathways: a review of common approaches by Misman, Muhammad Faiz, Deris, Safaai, Mohd. Hashim, Siti Zaiton, Jumali, R., Mohamad, Mohd. Saberi

“…In this reiew, we have discussed about approaches in pathway based microarray analysis. Commonly, there are two approaches in pathway based analysis, Enrichment Score and Supervised Machine Learning. …”

Gene selection and classification in microarray datasets using a hybrid approach of PCC-BPSO/GA with multi classifiers by Hameed, S. S., Muhammad, F. F., Hassan, R., Saeed, F.

“…In this study, a three-phase hybrid approach is proposed for the selection and classification of high dimensional microarray data. The method uses Pearson's Correlation Coefficient (PCC) in combination with Binary Particle Swarm Optimization (BPSO) or Genetic Algorithm (GA) along with various classifiers, thereby forming a PCC-BPSO/GA-multi classifiers approach. …”
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Gene selection using hybrid multi-objective cuckoo search algorithm with evolutionary operators for cancer microarray data by Othman, Mohd. Shahizan, Raja Kumaran, Shamini, Mi Yusuf, Lizawati

“…Microarray data play a huge role in recognizing a proper cancer diagnosis and classification. …”
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A two-stage sparse logistic regression for optimal gene selection in high-dimensional microarray data classification by Algamal, Zakariya Yahya, Lee, Muhammad Hisyam

P253: Evaluating the clinical diagnostic yield of fragile X and chromosome microarray testing for patients with autism and/or intellectual disability by S.Y. Cindy Yang, Emily Dunn, Elizabeth Spiteri, Dena Matalon

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Genome-Wide Screening of Genes Showing Altered Expression in Liver Metastases of Human Colorectal Cancers by cDNA Microarray by Rempei Yanagawa, Yoichi Furukawa, Tatsuhiko Tsunoda, Osamu Kitahara, Masao Kameyama, Kohei Murata, Osamu Ishikawa, Yusuke Nakamura

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Placental Microarray Profiling Reveals Common mRNA and lncRNA Expression Patterns in Preeclampsia and Intrauterine Growth Restriction by Diana Medina-Bastidas, Mario Guzmán-Huerta, Hector Borboa-Olivares, César Ruiz-Cruz, Sandra Parra-Hernández, Arturo Flores-Pliego, Ivan Salido-Guadarrama, Lisbeth Camargo-Marín, Eliakym Arambula-Meraz, Guadalupe Estrada-Gutierrez

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Corrigendum: CCDC25 may be a potential diagnostic and prognostic marker of hepatocellular carcinoma: Results from microarray analysis by Hongyang Deng, Jiaxing Zhang, Yijun Zheng, Jipin Li, Qi Xiao, Fengxian Wei, Wei Han, Xiaodong Xu, Youcheng Zhang

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Specific IgE and Basophil Activation Test by Microarray: A Promising Tool for Diagnosis of Platinum Compound Hypersensitivity Reactions by Carlos Fernández-Lozano, Claudia Geraldine Rita, Alicia Barra-Castro, Belén de la Hoz Caballer, Ernesto Roldán, Cristina Pueyo López, Javier Martinez-Botas, María Pilar Berges-Gimeno

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Microarray analysis of ncRNA expression patterns in <it>Caenorhabditis elegans </it>after RNAi against snoRNA associated proteins by Skogerbø Geir, He Housheng, Aftab Muhammad, Chen Runsheng

“…Thereby, the study also demonstrates the feasibility of combining RNAi against candidate proteins with ncRNA microarray analysis to investigate ncRNA-protein interactions and hence ncRNA cellular functions.…”
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Detection of Human Herpesviruses in Sera and Saliva of Asymptomatic HIV-Infected Individuals Using Multiplex RT-PCR DNA Microarray by Irna Sufiawati, Rahmi Harmiyati, Nanan Nur’aeny, Agnes Rengga Indrati, Ronny Lesmana, Rudi Wisaksana, Riezki Amalia

“…HHVs were detected with a multiplex reverse transcription-polymerase chain reaction (RT-PCR) DNA microarray Clart^®Entherpex kit. A total of 30 subjects were enrolled: 23 (76.67%) men and 7 (23.33%) women. …”
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Co-Expression of Coxsackievirus/Adenovirus Receptors and Desmoglein 2 in Lung Adenocarcinoma: A Comprehensive Analysis of Bioinformatics and Tissue Microarrays by Ching-Fu Weng, Chi-Jung Huang, Mei-Hsuan Wu, Henry Hsin-Chung Lee, Thai-Yen Ling

“…We therefore analyzed a tissue microarray (TMA) comprised of 108 lung samples and an immunohistochemical assay. …”
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Differentially Expressed Genes in Atopic Dermatitis: Bioinformatics analysis of pooled microarray gene expression datasets in Gene Expression Omnibus by Danna Jia, Wenqiang Chen, Bin Li

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