In-host population dynamics of Mycobacterium tuberculosis complex during active disease by Roger Vargas, Luca Freschi, Maximillian Marin, L Elaine Epperson, Melissa Smith, Irina Oussenko, David Durbin, Michael Strong, Max Salfinger, Maha Reda Farhat

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Editorial: Molecular Ecology and Genetic Diversity of the Roseobacter Clade by Rolf Daniel, Meinhard Simon, Bernd Wemheuer, Bernd Wemheuer, Bernd Wemheuer

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Terminal investment induced by a bacteriophage in a rhizosphere bacterium [v1; ref status: indexed, http://f1000r.es/SZsiDP] by Timothée Poisot, Thomas Bell, Esteban Martinez, Claire Gougat-Barbera, Michael E Hochberg

Subjects: “…Microbial Evolution & Genomics…”
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Terminal investment induced by a bacteriophage in a rhizosphere bacterium [v2; ref status: indexed, http://f1000r.es/zh] by Timothée Poisot, Thomas Bell, Esteban Martinez, Claire Gougat-Barbera, Michael E Hochberg

Subjects: “…Microbial Evolution & Genomics…”
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Editorial: Integrating multi-scale approaches for predicting microbiome ecology and evolution by Andrea Quagliariello, Ricardo S. Ramiro, Alejandro Couce, Maria Elena Martino

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Challenges in estimating effective population sizes from metagenome-assembled genomes by Xiaojun Wang, Xiaoyuan Feng, Xiaoyuan Feng

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New Insights into Microbial Diversity of the Traditional Packed Table Olives <i>Aloreña de Málaga</i> through Metataxonomic Analysis by Elio López-García, Antonio Benítez-Cabello, Javier Ramiro-García, Verónica Romero-Gil, Francisco Rodríguez-Gómez, Francisco Noé Arroyo-López

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Genomic Islands Shape the Genetic Background of Both JP2 and Non-JP2 <i>Aggregatibacter actinomycetemcomitans</i> by Weerayuth Kittichotirat, Roger E. Bumgarner, Casey Chen

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An emerging paradigm for the origin and evolution of shelled amoebae, integrating advances from molecular phylogenetics, morphology and paleontology by Daniel JG Lahr

Subjects: “…microbial evolution…”
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Associations between Mycobacterium tuberculosis Strains and Phenotypes by Timothy Brown, Vladyslav Nikolayevskyy, Preya Velji, Francis Drobniewski

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Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus by Kirsten I Bos, Alexander Herbig, Jason Sahl, Nicholas Waglechner, Mathieu Fourment, Stephen A Forrest, Jennifer Klunk, Verena J Schuenemann, Debi Poinar, Melanie Kuch, G Brian Golding, Olivier Dutour, Paul Keim, David M Wagner, Edward C Holmes, Johannes Krause, Hendrik N Poinar

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Persistent Core Populations Shape the Microbiome Throughout the Water Column in the North Pacific Subtropical Gyre by Daniel R. Mende, Dominique Boeuf, Edward F. DeLong

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Investigating macroecological patterns in coarse-grained microbial communities using the stochastic logistic model of growth by William R Shoemaker, Jacopo Grilli

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Bioconductor workflow for microbiome data analysis: from raw reads to community analyses [version 1; referees: 2 approved] by Ben J. Callahan, Kris Sankaran, Julia A. Fukuyama, Paul J. McMurdie, Susan P. Holmes

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Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla by Eric D. Becraft, Tanja Woyke, Jessica Jarett, Natalia Ivanova, Filipa Godoy-Vitorino, Nicole Poulton, Julia M. Brown, Joseph Brown, M. C. Y. Lau, Tullis Onstott, Jonathan A. Eisen, Duane Moser, Ramunas Stepanauskas

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The cyl Genes Reveal the Biosynthetic and Evolutionary Origins of the Group B Streptococcus Hemolytic Lipid, Granadaene by Blair Armistead, Blair Armistead, Christopher Whidbey, Christopher Whidbey, Lakshminarayan M. Iyer, Pilar Herrero-Foncubierta, Phoenicia Quach, Ali Haidour, L. Aravind, Juan Manuel Cuerva, Heather B. Jaspan, Heather B. Jaspan, Heather B. Jaspan, Heather B. Jaspan, Lakshmi Rajagopal, Lakshmi Rajagopal, Lakshmi Rajagopal

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Strong selective environments determine evolutionary outcome in time‐dependent fitness seascapes by Johannes Cairns, Florian Borse, Tommi Mononen, Teppo Hiltunen, Ville Mustonen

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Do Active Nematic Self-Mixing Dynamics Help Growing Bacterial Colonies to Maintain Local Genetic Diversity? by Fabian Jan Schwarzendahl , Fabian Jan Schwarzendahl , Daniel A. Beller , Daniel A. Beller 

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Corrigendum: The cyl Genes Reveal the Biosynthetic and Evolutionary Origins of the Group B Streptococcus Hemolytic Lipid, Granadaene by Blair Armistead, Blair Armistead, Christopher Whidbey, Christopher Whidbey, Lakshminarayan M. Iyer, Pilar Herrero-Foncubierta, Phoenicia Quach, Ali Haidour, L. Aravind, Juan Manuel Cuerva, Heather B. Jaspan, Heather B. Jaspan, Heather B. Jaspan, Heather B. Jaspan, Lakshmi Rajagopal, Lakshmi Rajagopal, Lakshmi Rajagopal

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Comparative Genomics of <i>Escherichia coli</i> Serotype O55:H7 Using Complete Closed Genomes by Margaret D. Weinroth, James L. Bono

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