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Nonequilibrium molecular dynamics
Published 2005-01-01“…Nonequilibrium Molecular Dynamics is a powerful simulation tool. Like its equilibrium cousin, nonequilibrium molecular dynamics is based on time-reversible equations of motion. …”
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Halide in Molecular Dynamics
Published 2023“…However, it is often the case that the system’s size is several magnitudes larger; therefore, the task is handed off to computers and simulators. Molecular dynamics, or MD, simulations tend to be extremely expensive, taking several weeks to compute less than a second’s worth of real time. …”
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Molecular dynamics on quantum annealers
Published 2022-10-01“…Abstract In this work we demonstrate a practical prospect of using quantum annealers for simulation of molecular dynamics. A methodology developed for this goal, dubbed Quantum Differential Equations (QDE), is applied to propagate classical trajectories for the vibration of the hydrogen molecule in several regimes: nearly harmonic, highly anharmonic, and dissociative motion. …”
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MOLECULAR DYNAMICS SIMULATION OF COPOLYMERS
Published 2001-01-01Subjects: “…molecular dynamics…”
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Time Integrators for Molecular Dynamics
Published 2013-12-01“…This paper invites the reader to learn more about time integrators for Molecular Dynamics simulation through a simple MATLAB implementation. …”
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Development of molecular dynamics solver
Published 2009“…Molecular Dynamics simulation is a computer simulation in which particles are allowed to interact for a period of time. …”
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Molecular dynamics simulation : elementary methods /
Published 1992Subjects: “…Molecular dynamics…”
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Molecular dynamics : applications in molecular biology/
Published 1990Subjects: “…Molecular dynamics…”
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Molecular dynamic simulation of patchoulol biotransformation
Published 2016“…Biotransformation is a branch of biotechnology process that produces the natural compound in the perfume industry naturally. Molecular dynamic simulation is a powerful tool which can be used to understand the molecule interaction at the molecular level through the measurement of the interaction strength between the molecules involved in the biotransformation process. …”
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Programming an Interpreter Using Molecular Dynamics
Published 2007-12-01“…We consider the programming of an interpreter for a program notation that is close to existing assembly languages using PGA with the primitives of molecular dynamics as basic instructions. It happens that, although primarily meant for explaining programming language features relating to the use of dynamic data structures, the collection of primitives of molecular dynamics in itself is suited to our programming wants.…”
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Protocol for Molecular Dynamics Simulations of Proteins
Published 2016-12-01“…Molecular dynamics (MD) simulations have become one of the most important tools in understanding the behavior of bio-molecules on nanosecond to microsecond time scales. …”
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Molecular Dynamics Simulations: Advances and Applications
Published 2022-03-01“…Molecular dynamics (MD) simulations have led to great advances in many scientific disciplines, such as chemical physics, materials science, and biophysics [...]…”
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Machine Learning with and for Molecular Dynamics Simulations
Published 2019-12-01Subjects: Get full text
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