Systematics of the avian family Alaudidae using multilocus and genomic data by Per Alström, Zeinolabedin Mohammadi, Erik D. Enbody, Martin Irestedt, Derek Engelbrecht, Pierre-André Crochet, Alban Guillaumet, Loïs Rancilhac, B. Irene Tieleman, Urban Olsson, Paul F. Donald, Martin Stervander

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Phylogenomics of a rapid radiation: the Australian rainbow skinks by Jason G. Bragg, Sally Potter, Ana C. Afonso Silva, Conrad J. Hoskin, Benjamin Y. H. Bai, Craig Moritz

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Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics by Gustavo A. Bravo, Alexandre Antonelli, Christine D. Bacon, Krzysztof Bartoszek, Mozes P. K. Blom, Stella Huynh, Graham Jones, L. Lacey Knowles, Sangeet Lamichhaney, Thomas Marcussen, Hélène Morlon, Luay K. Nakhleh, Bengt Oxelman, Bernard Pfeil, Alexander Schliep, Niklas Wahlberg, Fernanda P. Werneck, John Wiedenhoeft, Sandi Willows-Munro, Scott V. Edwards

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Whole genome phylogeny of Gallus: introgression and data-type effects by George P. Tiley, Akanksha Pandey, Rebecca T. Kimball, Edward L. Braun, J. Gordon Burleigh

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Major patterns in the introgression history of Heliconius butterflies by Yuttapong Thawornwattana, Fernando Seixas, Ziheng Yang, James Mallet

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Identifying model violations under the multispecies coalescent model using P2C2M.SNAPP by Drew J. Duckett, Tara A. Pelletier, Bryan C. Carstens

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OCTAL: Optimal Completion of gene trees in polynomial time by Sarah Christensen, Erin K. Molloy, Pranjal Vachaspati, Tandy Warnow

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Phylogenetic Signal of Indels and the Neoavian Radiation by Peter Houde, Edward L. Braun, Nitish Narula, Uriel Minjares, Siavash Mirarab

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Phylogenomic Assessment of Biodiversity Using a Reference-Based Taxonomy: An Example With Horned Lizards (Phrynosoma) by Adam D. Leaché, Adam D. Leaché, Hayden R. Davis, Hayden R. Davis, Sonal Singhal, Matthew K. Fujita, Megan E. Lahti, Kelly R. Zamudio

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Phylogeny and species delimitation of ciliates in the genus Spirostomum (class Heterotrichea) using single-cell transcriptomes by Shahed Uddin Ahmed Shazib, Auden Cote-L’Heureux, Ragib Ahsan, Sergio A. Muñoz-Gómez, JunMo Lee, Laura A. Katz, Mann Kyoon Shin

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Validation and description of two new north-western Australian Rainbow skinks with multispecies coalescent methods and morphology by Ana C. Afonso Silva, Natali Santos, Huw A. Ogilvie, Craig Moritz

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Using natural history to guide supervised machine learning for cryptic species delimitation with genetic data by Shahan Derkarabetian, James Starrett, Marshal Hedin

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Evolutionary Genetic Analysis Uncovers Multiple Species with Distinct Habitat Preferences and Antibiotic Resistance Phenotypes in the Stenotrophomonas maltophilia Complex by Luz E. Ochoa-Sánchez, Pablo Vinuesa

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Short branch attraction in phylogenomic inference under the multispecies coalescent by Liang Liu, Lili Yu, Shaoyuan Wu, Jonathan Arnold, Christopher Whalen, Charles Davis, Scott Edwards

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Naming and describing the diversity in the Usnea cornuta aggregate (lichenized Ascomycota , Parmeliaceae ) focusing on Brazilian specimens by Alice Gerlach, Rosa Mara Borges da Silveira, Carlos Rojas, Philippe Clerc

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New Insights Into the Relationships Within Subtribe Scorzonerinae (Cichorieae, Asteraceae) Using Hybrid Capture Phylogenomics (Hyb-Seq) by Elham Hatami, Katy E. Jones, Norbert Kilian

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Testing species hypotheses for Fridericia magna, an enchytraeid worm (Annelida: Clitellata) with great mitochondrial variation by Svante Martinsson, Mårten Klinth, Christer Erséus

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Phylotranscriptomic discordance is best explained by incomplete lineage sorting within Allium subgenus Cyathophora and thus hemiplasy accounts for interspecific trait transition by Zengzhu Zhang, Gang Liu, Minjie Li

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