Comparative performance analysis of neoepitope prediction algorithms in head and neck cancer by Leila Y. Chihab, Leila Y. Chihab, Julie G. Burel, Aaron M. Miller, Aaron M. Miller, Luise Westernberg, Brandee Brown, Jason Greenbaum, Michael J. Korrer, Stephen P. Schoenberger, Sebastian Joyce, Sebastian Joyce, Young J. Kim, Zeynep Koşaloğlu-Yalçin, Bjoern Peters, Bjoern Peters

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IMPROVE: a feature model to predict neoepitope immunogenicity through broad-scale validation of T-cell recognition by Annie Borch, Ibel Carri, Birkir Reynisson, Heli M. Garcia Alvarez, Kamilla K. Munk, Alessandro Montemurro, Nikolaj Pagh Kristensen, Siri A. Tvingsholm, Jeppe Sejerø Holm, Christina Heeke, Keith Henry Moss, Ulla Kring Hansen, Anna-Lisa Schaap-Johansen, Frederik Otzen Bagger, Vinicius Araujo Barbosa de Lima, Kristoffer S. Rohrberg, Samuel A. Funt, Marco Donia, Inge Marie Svane, Ulrik Lassen, Carolina Barra, Morten Nielsen, Morten Nielsen, Sine Reker Hadrup

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Residue substitution enhances the immunogenicity of neoepitopes from gastric cancers by Huahui Yu, Jieyu Li, Yuan Yuan, Yu Chen, Jingwen Hong, Chunmei Ye, Wansong Lin, Huijing Chen, Zengqing Guo, Bo Li, Yunbin Ye

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Immunological analysis of hybrid neoantigen peptide encompassing class I/II neoepitope-pulsed dendritic cell vaccine by Shinji Morisaki, Shinji Morisaki, Shinji Morisaki, Hideya Onishi, Takafumi Morisaki, Makoto Kubo, Masayo Umebayashi, Hiroto Tanaka, Norihiro Koya, Shinichiro Nakagawa, Kenta Tsujimura, Sachiko Yoshimura, Poh Yin Yew, Kazuma Kiyotani, Yusuke Nakamura, Masafumi Nakamura, Takanari Kitazono, Takashi Morisaki

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SIGANEO: Similarity network with GAN enhancement for immunogenic neoepitope prediction by Yilin Ye, Yiming Shen, Jian Wang, Dong Li, Yu Zhu, Zhao Zhao, Youdong Pan, Yi Wang, Xing Liu, Ji Wan

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Predicting T cell recognition of MHC class I restricted neoepitopes by Zeynep Koşaloğlu-Yalçın, Manasa Lanka, Angela Frentzen, Ashmitaa Logandha Ramamoorthy Premlal, John Sidney, Kerrie Vaughan, Jason Greenbaum, Paul Robbins, Jared Gartner, Alessandro Sette, Bjoern Peters

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Beyond MHC binding: immunogenicity prediction tools to refine neoantigen selection in cancer patients by Ibel Carri, Erika Schwab, Enrique Podaza, Heli M. Garcia Alvarez, José Mordoh, Morten Nielsen, María Marcela Barrio

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Cartilage Collagen Neoepitope C2C Expression in the Articular Cartilage and Its Relation to Joint Tissue Damage in Patients with Knee Osteoarthritis by Taavi Torga, Siim Suutre, Kalle Kisand, Marina Aunapuu, Andres Arend

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Circular RNAs as a potential source of neoepitopes in cancer by Jiaqi Xia, Shuai Li, Baorui Ren, Pengxia Zhang

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NEPdb: A Database of T-Cell Experimentally-Validated Neoantigens and Pan-Cancer Predicted Neoepitopes for Cancer Immunotherapy by Jiaqi Xia, Peng Bai, Weiliang Fan, Qiming Li, Yongzheng Li, Dehe Wang, Lei Yin, Yu Zhou, Yu Zhou

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Novel Selection Approaches to Identify Antibodies Targeting Neoepitopes on the C5b6 Intermediate Complex to Inhibit Membrane Attack Complex Formation by Lasse Stach, Emily K. H. Dinley, Nadia Tournier, Ryan P. Bingham, Darren A. Gormley, Jo L. Bramhall, Adam Taylor, Jane E. Clarkson, Katherine A. Welbeck, Claire L. Harris, Maria Feeney, Jane P. Hughes, Armin Sepp, Thil D. Batuwangala, Semra J. Kitchen, Eva-Maria Nichols

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ProTECT—Prediction of T-Cell Epitopes for Cancer Therapy by Arjun A. Rao, Arjun A. Rao, Arjun A. Rao, Ada A. Madejska, Ada A. Madejska, Jacob Pfeil, Jacob Pfeil, Jacob Pfeil, Benedict Paten, Benedict Paten, Benedict Paten, Sofie R. Salama, Sofie R. Salama, Sofie R. Salama, David Haussler, David Haussler, David Haussler, David Haussler

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T Cell Epitope Prediction and Its Application to Immunotherapy by Anna-Lisa Schaap-Johansen, Milena Vujović, Annie Borch, Sine Reker Hadrup, Paolo Marcatili

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The neoepitope landscape of breast cancer: implications for immunotherapy by Pooja Narang, Meixuan Chen, Amit A. Sharma, Karen S. Anderson, Melissa A. Wilson

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Neoepitope fragments as biomarkers for different phenotypes of intervertebral disc degeneration by Shangbin Cui, Wenyue Li, Graciosa Q. Teixeira, Cornelia Neidlinger‐Wilke, Hans‐Joachim Wilke, Lisbet Haglund, Hongwei Ouyang, R. Geoff Richards, Sibylle Grad, Mauro Alini, Zhen Li

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Tumor Neoepitope-Based Vaccines: A Scoping Review on Current Predictive Computational Strategies by Luiz Gustavo do Nascimento Rocha, Paul Anderson Souza Guimarães, Maria Gabriela Reis Carvalho, Jeronimo Conceição Ruiz

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Burden of tumor mutations, neoepitopes, and other variants are weak predictors of cancer immunotherapy response and overall survival by Mary A. Wood, Benjamin R. Weeder, Julianne K. David, Abhinav Nellore, Reid F. Thompson

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K27M-mutant histone-3 as a novel target for glioma immunotherapy by Katharina Ochs, Martina Ott, Theresa Bunse, Felix Sahm, Lukas Bunse, Katrin Deumelandt, Jana K. Sonner, Melanie Keil, Andreas von Deimling, Wolfgang Wick, Michael Platten

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TANTIGEN 2.0: a knowledge base of tumor T cell antigens and epitopes by Guanglan Zhang, Lou Chitkushev, Lars Rønn Olsen, Derin B. Keskin, Vladimir Brusic

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A Phase I/II trial comparing autologous dendritic cell vaccine pulsed either with personalized peptides (PEP-DC) or with tumor lysate (OC-DC) in patients with advanced high-grade o... by Apostolos Sarivalasis, Caroline Boudousquié, Klara Balint, Brian J. Stevenson, Philippe O. Gannon, Emanuela Marina Iancu, Laetitia Rossier, Silvia Martin Lluesma, Patrice Mathevet, Christine Sempoux, George Coukos, Urania Dafni, Alexandre Harari, Michal Bassani-Sternberg, Lana E. Kandalaft

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