Molecular function limits divergent protein evolution on planetary timescales by Mariam M Konaté, Germán Plata, Jimin Park, Dinara R Usmanova, Harris Wang, Dennis Vitkup

Subjects: “…orthologous protein…”
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Phylogenetic Comparison of Swainsonine Biosynthetic Gene Clusters among Fungi by Marwa Neyaz, Sumanjari Das, Daniel Cook, Rebecca Creamer

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Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies by Davide Heller, Damian Szklarczyk, Christian von Mering

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Identification of Personality-Related Candidate Genes in Thoroughbred Racehorses Using a Bioinformatics-Based Approach Involving Functionally Annotated Human Genes by Tamu Yokomori, Aoi Ohnuma, Teruaki Tozaki, Takao Segawa, Takuya Itou

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An insight into the gene expression evolution in Gossypium species based on the leaf transcriptomes by Yuqing Wu, Rongnan Sun, Tong Huan, Yanyan Zhao, Dongliang Yu, Yuqiang Sun

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Variations in metabolic pathways create challenges for automated metabolic reconstructions: Examples from the tetrahydrofolate synthesis pathway by Valérie de Crécy-Lagard

Subjects: “…Non-orthologous displacements…”
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The Phylogenetic Relationships of the Family Sciaenidae Based on Genome-Wide Data Analysis by Xiaolu Han, Shihuai Jin, Zhiqiang Han, Tianxiang Gao

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Phylogenetic Study of Aegilops species and their relation with Triticum and Secale analysed by glutenin genes by A. De Bustos, N. Jouve

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Categorization of Orthologous Gene Clusters in 92 Ascomycota Genomes Reveals Functions Important for Phytopathogenicity by Daniel Peterson, Tang Li, Ana M. Calvo, Yanbin Yin

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Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions by Svetlana Karamycheva, Yuri I. Wolf, Erez Persi, Eugene V. Koonin, Kira S. Makarova

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Comprehensive identification and analysis of DELLA genes throughout the plant kingdom by Pengfei Wang, Qianqian Zhang, Yingchun Chen, Yanxia Zhao, Fengshan Ren, Hongmei Shi, Xinying Wu

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Improving N-terminal protein annotation of <it>Plasmodium</it> species based on signal peptide prediction of orthologous proteins by Neto Armando, Alvarenga Denise A, Rezende Antônio M, Resende Sarah S, Ribeiro Ricardo, Fontes Cor JF, Carvalho Luzia H, de Brito Cristiana F

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Can whole genome sequencing resolve taxonomic ambiguities in fungi? The case study of Colletotrichum associated with ferns by Andrea Menicucci, Salvatore Iacono, Madalena Ramos, Madalena Ramos, Chiara Fiorenzani, Natalia Aparecida Peres, Lavern Wayne Timmer, Antonio Prodi, Riccardo Baroncelli, Riccardo Baroncelli

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Genome-wide identification and expression profiling of photosystem II (PsbX) gene family in upland cotton (Gossypium hirsutum L) by Irum Raza, Abida Parveen, Adeel Ahmad, Daowu Hu, Zhaoe Pan, Imran Ali, Xiongming Du

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Comparative Genome Analysis Reveals Natural Variations in the Genomes of Erwinia pyrifoliae, a Black Shoot Blight Pathogen in Apple and Pear by Gyu Min Lee, Seyoung Ko, Eom-Ji Oh, Yu-Rim Song, Donghyuk Kim, Chang-Sik Oh

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How to build phylogenetic species trees with OMA [version 2; peer review: 2 approved] by Yannis Nevers, David Dylus, Natasha M. Glover, Antoine Gürtler, Christophe Dessimoz, Adrian M. Altenhoff

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Oligotrophic bacterium Hymenobacter latericoloratus CGMCC 16346 degrades the neonicotinoid imidacloprid in surface water by Leilei Guo, Zhiling Dai, Jingjing Guo, Wenlong Yang, Feng Ge, Yijun Dai

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The Tomato Genome Encodes SPCH, MUTE, and FAMA Candidates That Can Replace the Endogenous Functions of Their Arabidopsis Orthologs by Alfonso Ortega, Alberto de Marcos, Jonatan Illescas-Miranda, Montaña Mena, Carmen Fenoll

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Phylogeny-based comparative analysis of gene expression modulation upon drought stress across three cotton diploids by Tong Huan, Xinyu Zhang, Minghua Lv, Haotian Zhou, Yanyan Zhao, Dongliang Yu, Yuqiang Sun

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Nematode Orthologs of Macrophage Migration Inhibitory Factor (MIF) as Modulators of the Host Immune Response and Potential Therapeutic Targets by Justyna Karabowicz, Ewa Długosz, Piotr Bąska, Marcin Wiśniewski

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